Mercurial > repos > iuc > khmer_normalize_by_median
changeset 8:e84073b420a8 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 14ea2dc5ef36219c908ed64b256794711ce7b902"
| author | iuc |
|---|---|
| date | Tue, 23 Mar 2021 21:31:36 +0000 |
| parents | 557cc16931f4 |
| children | b1fe2ef3d244 |
| files | macros.xml normalize-by-median.xml test-data/test-abund-read-2.fq.gz |
| diffstat | 3 files changed, 6 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Wed Dec 18 16:01:09 2019 -0500 +++ b/macros.xml Tue Mar 23 21:31:36 2021 +0000 @@ -1,9 +1,10 @@ <macros> - <token name="@WRAPPER_VERSION@">3.0.0a3</token> - <token name="@TOOL_VERSION@">+galaxy1</token> + <token name="@TOOL_VERSION@">3.0.0a3</token> + <token name="@VERSION_SUFFIX@">2</token> + <token name="@PROFILE@">20.01</token> <xml name="requirements"> <requirements> - <requirement type="package" version="@WRAPPER_VERSION@">khmer</requirement> + <requirement type="package" version="@TOOL_VERSION@">khmer</requirement> <yield/> </requirements> </xml> @@ -75,7 +76,7 @@ help="Put in order of precedence such as longest reads first." /> </xml> <xml name="input_sequence_filename"> - <param name="input_sequence_filename" type="data" format="fasta,fastq" + <param name="input_sequence_filename" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Sequence in FASTA or FASTQ format" /> </xml> <xml name="input_countgraph_filename">
--- a/normalize-by-median.xml Wed Dec 18 16:01:09 2019 -0500 +++ b/normalize-by-median.xml Tue Mar 23 21:31:36 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="khmer_normalize_by_median" name="khmer: Normalize By Median" version="@WRAPPER_VERSION@@TOOL_VERSION@"> +<tool id="khmer_normalize_by_median" name="khmer: Normalize By Median" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>Filter reads using digital normalization via k-mer abundances</description> <macros> <token name="@BINARY@">normalize-by-median.py</token>