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comparison kma_map.xml @ 4:8fbd98f37c10 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/kma commit f040316174672d9e3ce53b1873ab07cff1128940
author iuc
date Mon, 15 Dec 2025 21:59:45 +0000
parents 0e8330535ea0
children
comparison
equal deleted inserted replaced
3:0e8330535ea0 4:8fbd98f37c10
1 <tool id="kma_map" name="Map with KMA" version="@TOOL_VERSION@+galaxy0" profile="23.0"> 1 <tool id="kma_map" name="Map with KMA" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
162 <has_line_matching expression="^>b0842_1"/> 162 <has_line_matching expression="^>b0842_1"/>
163 </assert_contents> 163 </assert_contents>
164 </output> 164 </output>
165 <output name="read_mapping" ftype="tabular"> 165 <output name="read_mapping" ftype="tabular">
166 <assert_contents> 166 <assert_contents>
167 <has_n_lines n="492"/> 167 <has_n_lines n="513"/>
168 <has_n_columns n="7"/> 168 <has_n_columns n="7"/>
169 <has_text text="b0842_1"/> 169 <has_text text="b0842_1"/>
170 </assert_contents> 170 </assert_contents>
171 </output> 171 </output>
172 </test> 172 </test>
181 <param name="matrix" value="true"/> 181 <param name="matrix" value="true"/>
182 </conditional> 182 </conditional>
183 <param name="kma_index" value="test_index"/> 183 <param name="kma_index" value="test_index"/>
184 <output name="assembly_matrix" ftype="tabular"> 184 <output name="assembly_matrix" ftype="tabular">
185 <assert_contents> 185 <assert_contents>
186 <has_n_lines n="2551"/> 186 <has_n_lines n="2578"/>
187 <has_n_columns n="7" comment="#"/> 187 <has_n_columns n="7" comment="#"/>
188 <has_line_matching expression="^A&#009;.*"/> 188 <has_line_matching expression="^A&#009;.*"/>
189 <has_line_matching expression="^T&#009;.*"/> 189 <has_line_matching expression="^T&#009;.*"/>
190 <has_line_matching expression="^C&#009;.*"/> 190 <has_line_matching expression="^C&#009;.*"/>
191 <has_line_matching expression="^G&#009;.*"/> 191 <has_line_matching expression="^G&#009;.*"/>
229 <has_line_matching expression="^>b0842_1"/> 229 <has_line_matching expression="^>b0842_1"/>
230 </assert_contents> 230 </assert_contents>
231 </output> 231 </output>
232 <output name="read_mapping" ftype="tabular"> 232 <output name="read_mapping" ftype="tabular">
233 <assert_contents> 233 <assert_contents>
234 <has_n_lines n="1012"/> 234 <has_n_lines n="1048"/>
235 <has_n_columns n="7"/> 235 <has_n_columns n="7"/>
236 <has_text text="b0842_1"/> 236 <has_text text="b0842_1"/>
237 </assert_contents> 237 </assert_contents>
238 </output> 238 </output>
239 </test> 239 </test>