Mercurial > repos > iuc > kofamscan

changeset 5:8ec7636fa875 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kofamscan commit 1e2ca1537bd6d141a3494d6bb0a2f050082f7257
author iuc
date Mon, 06 May 2024 18:37:31 +0000
parents 2eb7932e91a3
children
files kofamscan.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/kofamscan.xml	Thu Apr 25 20:57:51 2024 +0000
+++ b/kofamscan.xml	Mon May 06 18:37:31 2024 +0000
@@ -2,7 +2,7 @@
     <description>gene function annotation based on KEGG orthology and HMM</description>
     <macros>
         <token name="@TOOL_VERSION@">1.3.0</token>
-        <token name="@VERSION_SUFFIX@">3</token>
+        <token name="@VERSION_SUFFIX@">4</token>
         <xml name="reportannotation" token_selected="">
             <param name="reportannotation" type="boolean" truevalue="--report-unannotated" falsevalue="--no-report-unannotated" checked="@SELECTED@" label="Include sequence name to outputs even if no KOs are assigned?"/>
         </xml>
@@ -67,10 +67,11 @@
                 <option value="hmm">HMM file(s)</option>
             </param>
             <when value="cached">
-                <param name="kofam" type="select">
+                <param name="kofam" type="select" label="Kofam database to use">
                     <options from_data_table="kofam"/>
+                    <validator type="no_options" message="No option available for this input."/>
                 </param>
-                <param name="kofam_subset" type="select" optional="true">
+                <param name="kofam_subset" type="select" optional="true" label="Use only a subset of the selected Kofam database" help="If nothing is selected the complete database is used">
                     <options from_data_table="kofam_subset">
                         <filter type="param_value" column="2" ref="kofam"/>
                         <filter type="sort_by" column="1"/>
@@ -78,7 +79,6 @@
                         <column name="name" index="1"/>
                         <column name="value" index="0"/>
                     </options>
-                    <validator type="no_options" message="No option available for this input"/>
                 </param>
             </when>
             <when value="compressed">