Mercurial > repos > iuc > krakentools_alpha_diversity

comparison alpha_diversity.xml @ 6:7337f9722ad7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit d2787f61f714a0b30eb2806456b78d2b1e2ff280
author iuc
date Tue, 05 Aug 2025 12:50:14 +0000
parents 78b69342c280
children
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5:78b69342c280 6:7337f9722ad7
47 <test> 47 <test>
48 <param name="filename" value="bracken_abundance.tabular"/> 48 <param name="filename" value="bracken_abundance.tabular"/>
49 <param name="alpha" value="Si"/> 49 <param name="alpha" value="Si"/>
50 <output name="output" ftype="txt"> 50 <output name="output" ftype="txt">
51 <assert_contents> 51 <assert_contents>
52 <has_text text="Simpson's diversity: 0.9805668888241948"/> 52 <has_text text="Simpson's index of diversity: 0.9805669261928186"/>
53 </assert_contents> 53 </assert_contents>
54 </output> 54 </output>
55 </test> 55 </test>
56 <test> 56 <test>
57 <param name="filename" value="bracken_abundance.tabular"/> 57 <param name="filename" value="bracken_abundance.tabular"/>
58 <param name="alpha" value="ISi"/> 58 <param name="alpha" value="ISi"/>
59 <output name="output" ftype="txt"> 59 <output name="output" ftype="txt">
60 <assert_contents> 60 <assert_contents>
61 <has_text text="Simpson's Reciprocal Index: 51.45856424909617"/> 61 <has_text text="Simpson's Reciprocal Index: 51.458663200798206"/>
62 </assert_contents> 62 </assert_contents>
63 </output> 63 </output>
64 </test> 64 </test>
65 <test> 65 <test>
66 <param name="filename" value="bracken_abundance.tabular"/> 66 <param name="filename" value="bracken_abundance.tabular"/>
67 <param name="alpha" value="F"/> 67 <param name="alpha" value="F"/>
68 <output name="output" ftype="txt"> 68 <output name="output" ftype="txt">
69 <assert_contents> 69 <assert_contents>
70 <has_text text="Fisher's index: 1688.9352909860668"/> 70 <has_text text="Fisher's index: 11.987142187765064"/>
71 </assert_contents> 71 </assert_contents>
72 </output> 72 </output>
73 </test> 73 </test>
74 </tests> 74 </tests>
75 <help><![CDATA[ 75 <help><![CDATA[