Mercurial > repos > iuc > last

annotate test-data/last_train.txt @ 3:3de2195f32c0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
author iuc
date Fri, 13 Nov 2020 09:05:49 +0000
parents 9a7e91fc6562
children 8705e0d74a0f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
1 # lastal version: 1021
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
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diff changeset
2 # maximum percent identity: 100
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
3 # scale of score parameters: 4.5512
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
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diff changeset
4 # scale used while training: 91.024
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
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diff changeset
5
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
6 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -r5 -q5 -a15 -b3 -A15 -B3 /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
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7
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
8 # aligned letter pairs: 14938.3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
9 # deletes: 664.27
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
10 # inserts: 839.49
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
11 # delOpens: 344.82
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
12 # insOpens: 404.93
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
13 # alignments: 3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
14 # mean delete size: 1.92643
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
15 # mean insert size: 2.07317
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
16 # matchProb: 0.951966
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
17 # delOpenProb: 0.0219742
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
18 # insOpenProb: 0.0258048
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
19 # delExtendProb: 0.480904
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
20 # insExtendProb: 0.517648
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
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21
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
22 # substitution percent identity: 71.9318
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
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23
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
24 # count matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
25 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
26 # A 3296.3 533.237 387.81 392.24
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
27 # C 553.59 3241.5 182.39 686.22
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
28 # G 232.54 102.399 1565.4 84.91
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
29 # T 335.173 558.68 147.16 2651
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
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diff changeset
30
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
31 # probability matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
32 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
33 # A 0.22048 0.0356667 0.0259395 0.0262358
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
34 # C 0.0370281 0.216815 0.0121996 0.0458993
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
35 # G 0.0155539 0.00684918 0.104705 0.00567939
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
36 # T 0.0224188 0.0373685 0.00984312 0.177318
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
37
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
38 # delExistCost: 343
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
39 # insExistCost: 341
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
40 # delExtendCost: 64
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
41 # insExtendCost: 58
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
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diff changeset
42
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
43 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
44 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
45 # A 76 -90 -59 -104
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
46 # C -87 73 -128 -55
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
47 # G -89 -164 145 -167
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
48 # T -112 -66 -127 90
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
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diff changeset
49
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
50 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.3148 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
51
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
52 # aligned letter pairs: 14338.3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
53 # deletes: 327.44
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
54 # inserts: 474.13
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
55 # delOpens: 166.73
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
56 # insOpens: 216.45
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
57 # alignments: 10
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
58 # mean delete size: 1.96389
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
59 # mean insert size: 2.19048
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
60 # matchProb: 0.973244
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
61 # delOpenProb: 0.0113172
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
62 # insOpenProb: 0.014692
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
63 # delExtendProb: 0.490807
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
64 # insExtendProb: 0.54348
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
65
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
66 # substitution percent identity: 70.6019
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
67
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
68 # count matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
69 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
70 # A 3076.4 546.106 412.41 369.93
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
71 # C 561.42 2983.2 149.401 735.35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
72 # G 245.82 80.868 1562.07 66.655
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
73 # T 326.724 603.44 120.838 2510.5
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
74
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
75 # probability matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
76 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
77 # A 0.214366 0.0380532 0.0287371 0.0257771
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
78 # C 0.0391203 0.207872 0.0104104 0.0512399
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
79 # G 0.017129 0.00563496 0.108846 0.00464458
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
80 # T 0.0227664 0.0420483 0.0084201 0.174934
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
81
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
82 # delExistCost: 405
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
83 # insExistCost: 402
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
84 # delExtendCost: 64
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
85 # insExtendCost: 54
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
86
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
87 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
88 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
89 # A 77 -81 -49 -104
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
90 # C -79 73 -142 -42
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
91 # G -80 -181 146 -186
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
92 # T -108 -52 -142 90
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
93
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
94 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4973 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
95
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
96 # aligned letter pairs: 14657.7
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
97 # deletes: 218.21
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
98 # inserts: 385.36
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
99 # delOpens: 102.2
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
100 # insOpens: 152.161
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
101 # alignments: 10
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
102 # mean delete size: 2.13513
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
103 # mean insert size: 2.53258
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
104 # matchProb: 0.982218
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
105 # delOpenProb: 0.00684846
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
106 # insOpenProb: 0.0101964
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
107 # delExtendProb: 0.531644
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
108 # insExtendProb: 0.605146
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
109
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
110 # substitution percent identity: 69.4007
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
111
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
112 # count matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
113 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
114 # A 3091.6 591.394 434.35 391.72
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
115 # C 605.8 2996.8 154.6091 779.75
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
116 # G 260.46 83.802 1568.22 67.9713
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
117 # T 351.852 646.07 124.676 2532.5
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
118
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
119 # probability matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
120 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
121 # A 0.210577 0.0402814 0.0295847 0.0266811
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
122 # C 0.0412626 0.20412 0.0105308 0.0531108
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
123 # G 0.0177406 0.00570797 0.106816 0.0046297
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
124 # T 0.0239655 0.0440055 0.008492 0.172495
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
125
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
126 # delExistCost: 466
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
127 # insExistCost: 457
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
128 # delExtendCost: 57
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
129 # insExtendCost: 45
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
130
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
131 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
132 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
133 # A 76 -75 -45 -100
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
134 # C -73 72 -140 -38
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
135 # G -75 -178 147 -185
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
136 # T -103 -48 -140 89
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
137
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
138 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.5154 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
139
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
140 # aligned letter pairs: 14615.5
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
141 # deletes: 176.132
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
142 # inserts: 337.667
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
143 # delOpens: 73.361
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
144 # insOpens: 117.993
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
145 # alignments: 8
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
146 # mean delete size: 2.40089
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
147 # mean insert size: 2.86175
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
148 # matchProb: 0.986477
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
149 # delOpenProb: 0.00495152
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
150 # insOpenProb: 0.00796397
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
151 # delExtendProb: 0.583489
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
152 # insExtendProb: 0.650564
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
153
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
154 # substitution percent identity: 68.8798
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
155
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
156 # count matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
157 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
158 # A 3057.2 603.516 434.56 399.47
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
159 # C 620.42 2962.4 159.336 789.74
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
160 # G 264.31 86.899 1557.17 68.449
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
161 # T 353.847 650 125.897 2508.2
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
162
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
163 # probability matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
164 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
165 # A 0.208805 0.0412198 0.0296802 0.0272836
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
166 # C 0.0423743 0.20233 0.0108826 0.0539388
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
167 # G 0.0180522 0.00593515 0.106354 0.00467503
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
168 # T 0.0241675 0.0443946 0.00859869 0.171309
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
169
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
170 # delExistCost: 514
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
171 # insExistCost: 497
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
172 # delExtendCost: 49
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
173 # insExtendCost: 39
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
174
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
175 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
176 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
177 # A 75 -72 -44 -98
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
178 # C -71 72 -137 -37
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
179 # G -73 -174 146 -184
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
180 # T -102 -46 -138 89
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
181
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
182 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.0742 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
183
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
184 # aligned letter pairs: 14806.2
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
185 # deletes: 167.925
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
186 # inserts: 326.866
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
187 # delOpens: 62.871
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
188 # insOpens: 105.559
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
189 # alignments: 7
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
190 # mean delete size: 2.67095
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
191 # mean insert size: 3.09652
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
192 # matchProb: 0.988224
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
193 # delOpenProb: 0.00419626
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
194 # insOpenProb: 0.00704543
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
195 # delExtendProb: 0.625601
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
196 # insExtendProb: 0.677057
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
197
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
198 # substitution percent identity: 68.3956
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
199
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
200 # count matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
201 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
202 # A 3074.6 626.457 444.21 418.05
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
203 # C 637.55 2977.3 164.69 809.88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
204 # G 269.41 92.415 1559.3 69.29
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
205 # T 359.136 664.2 129.482 2527.2
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
206
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
207 # probability matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
208 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
209 # A 0.207419 0.042262 0.0299673 0.0282025
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
210 # C 0.0430104 0.200854 0.0111103 0.0546361
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
211 # G 0.0181749 0.0062345 0.105193 0.00467444
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
212 # T 0.024228 0.0448082 0.00873511 0.17049
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
213
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
214 # delExistCost: 546
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
215 # insExistCost: 519
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
216 # delExtendCost: 42
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
217 # insExtendCost: 35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
218
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
219 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
220 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
221 # A 75 -70 -43 -95
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
222 # C -69 71 -134 -36
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
223 # G -71 -169 146 -183
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
224 # T -101 -45 -136 88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
225
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
226 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.1177 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
227
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
228 # aligned letter pairs: 14896.9
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
229 # deletes: 177.451
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
230 # inserts: 344.879
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
231 # delOpens: 59.29
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
232 # insOpens: 103.311
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
233 # alignments: 5
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
234 # mean delete size: 2.99293
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
235 # mean insert size: 3.33826
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
236 # matchProb: 0.988809
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
237 # delOpenProb: 0.00393548
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
238 # insOpenProb: 0.00685746
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
239 # delExtendProb: 0.66588
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
240 # insExtendProb: 0.700443
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
241
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
242 # substitution percent identity: 68.1858
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
243
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
244 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
245 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
246 # A 3084.6 635.337 445.51 422.24
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
247 # C 649.18 2997.2 169.11 816.24
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
248 # G 273.53 93.848 1562.4 71.64
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
249 # T 365.354 674.15 132.032 2532.3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
250
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
251 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
252 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
253 # A 0.206678 0.0425696 0.0298506 0.0282914
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
254 # C 0.0434971 0.200822 0.0113309 0.0546907
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
255 # G 0.0183274 0.00628811 0.104686 0.00480011
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
256 # T 0.0244799 0.0451702 0.00884656 0.169672
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
257
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
258 # delExistCost: 567
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
259 # insExistCost: 531
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
260 # delExtendCost: 37
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
261 # insExtendCost: 32
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
262
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
263 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
264 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
265 # A 75 -70 -43 -95
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
266 # C -68 71 -132 -35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
267 # G -70 -168 146 -181
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
268 # T -100 -45 -135 88
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
269
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
270 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.5512 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
271
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
272 # aligned letter pairs: 14897.4
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
273 # deletes: 183.45
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
274 # inserts: 350.682
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
275 # delOpens: 57.728
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
276 # insOpens: 101.786
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
277 # alignments: 5
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
278 # mean delete size: 3.17783
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
279 # mean insert size: 3.44529
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
280 # matchProb: 0.989012
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
281 # delOpenProb: 0.00383246
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
282 # insOpenProb: 0.00675739
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
283 # delExtendProb: 0.68532
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
284 # insExtendProb: 0.709748
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
285
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
286 # substitution percent identity: 68.1676
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
287
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
288 # count matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
289 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
290 # A 3083.6 635.04 445.71 423.87
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
291 # C 650.27 2996.2 169.49 816.21
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
292 # G 272.96 94.054 1562.4 71.81
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
293 # T 365.777 674.06 132.018 2532.4
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
294
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
295 # probability matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
296 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
297 # A 0.206594 0.0425463 0.0298616 0.0283983
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
298 # C 0.0435666 0.200739 0.0113555 0.0546843
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
299 # G 0.0182877 0.00630141 0.104677 0.00481111
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
300 # T 0.0245062 0.0451605 0.00884491 0.169665
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
301
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
302 # delExistCost: 578
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
303 # insExistCost: 536
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
304 # delExtendCost: 34
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
305 # insExtendCost: 31
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
306
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
307 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
308 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
309 # A 75 -70 -43 -94
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
310 # C -68 71 -132 -36
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
311 # G -71 -168 146 -180
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
312 # T -100 -45 -135 88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
313
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
314 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.3765 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
315
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
316 # aligned letter pairs: 14897.3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
317 # deletes: 186.949
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
318 # inserts: 354.265
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
319 # delOpens: 56.756
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
320 # insOpens: 101.214
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
321 # alignments: 5
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
322 # mean delete size: 3.29391
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
323 # mean insert size: 3.50016
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
324 # matchProb: 0.989113
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
325 # delOpenProb: 0.00376834
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
326 # insOpenProb: 0.00672015
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
327 # delExtendProb: 0.696409
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
328 # insExtendProb: 0.714299
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
329
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
330 # substitution percent identity: 68.1476
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
331
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
332 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
333 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
334 # A 3081.6 633.831 445.71 424.07
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
335 # C 650.26 2986.2 169.38 816.09
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
336 # G 272.84 94.051 1561.4 71.9
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
337 # T 365.569 674.07 131.791 2532.4
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
338
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
339 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
340 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
341 # A 0.206664 0.0425072 0.029891 0.0284398
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
342 # C 0.0436089 0.200266 0.0113593 0.0547301
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
343 # G 0.0182977 0.00630742 0.104714 0.00482189
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
344 # T 0.0245165 0.0452057 0.00883841 0.169833
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
345
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
346 # delExistCost: 584
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
347 # insExistCost: 539
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
348 # delExtendCost: 33
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
349 # insExtendCost: 30
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
350
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
351 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
352 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
353 # A 75 -70 -43 -94
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
354 # C -68 71 -132 -35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
355 # G -71 -168 146 -180
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
356 # T -100 -45 -135 88
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
357
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
358 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.5205 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
359
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
360 # aligned letter pairs: 14897.4
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
361 # deletes: 188.951
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
362 # inserts: 357.176
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
363 # delOpens: 56.362
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
364 # insOpens: 100.973
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
365 # alignments: 5
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
366 # mean delete size: 3.35245
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
367 # mean insert size: 3.53734
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
368 # matchProb: 0.989155
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
369 # delOpenProb: 0.00374231
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
370 # insOpenProb: 0.00670439
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
371 # delExtendProb: 0.701711
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
372 # insExtendProb: 0.717302
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
373
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
374 # substitution percent identity: 68.1403
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
375
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
376 # count matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
377 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
378 # A 3081.6 634.732 445.81 423.98
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
379 # C 650.18 2986.2 169.39 816.1
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
380 # G 273.05 94.134 1561.4 71.9
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
381 # T 365.574 674.07 131.782 2531.4
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
382
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
383 # probability matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
384 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
385 # A 0.206662 0.0425672 0.0298975 0.0284335
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
386 # C 0.0436032 0.200264 0.0113598 0.0547303
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
387 # G 0.0183116 0.00631293 0.104713 0.00482185
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
388 # T 0.0245166 0.0452053 0.00883773 0.169764
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
389
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
390 # delExistCost: 587
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
391 # insExistCost: 541
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
392 # delExtendCost: 32
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
393 # insExtendCost: 30
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
394
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
395 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
396 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
397 # A 75 -70 -43 -94
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
398 # C -68 71 -132 -35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
399 # G -71 -168 146 -180
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
400 # T -100 -45 -135 88
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
401
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
402 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4821 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
403
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
404 # aligned letter pairs: 14897.4
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
405 # deletes: 189.355
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
406 # inserts: 357.265
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
407 # delOpens: 56.08
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
408 # insOpens: 100.658
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
409 # alignments: 5
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
410 # mean delete size: 3.37652
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
411 # mean insert size: 3.5493
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
412 # matchProb: 0.989194
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
413 # delOpenProb: 0.00372374
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
414 # insOpenProb: 0.00668374
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
415 # delExtendProb: 0.703837
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
416 # insExtendProb: 0.718254
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
417
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
418 # substitution percent identity: 68.1453
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
419
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
420 # count matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
421 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
422 # A 3081.6 633.731 445.81 423.98
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
423 # C 650.08 2986.2 169.39 816.1
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
424 # G 273.05 94.136 1561.4 71.9
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
425 # T 365.674 674.07 131.672 2531.4
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
426
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
427 # probability matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
428 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
429 # A 0.206677 0.0425032 0.0298997 0.0284356
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
430 # C 0.0435997 0.200279 0.0113607 0.0547344
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
431 # G 0.018313 0.00631353 0.10472 0.0048222
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
432 # T 0.0245251 0.0452087 0.00883101 0.169776
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
433
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
434 # delExistCost: 588
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
435 # insExistCost: 541
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
436 # delExtendCost: 32
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
437 # insExtendCost: 30
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
438
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
439 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
440 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
441 # A 75 -70 -43 -94
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
442 # C -68 71 -132 -35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
443 # G -71 -168 146 -180
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
444 # T -100 -45 -135 88
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
445
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
446 # lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4704 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
447
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
448 # aligned letter pairs: 14897.4
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
449 # deletes: 188.951
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
450 # inserts: 356.964
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
451 # delOpens: 55.8286
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
452 # insOpens: 100.647
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
453 # alignments: 5
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
454 # mean delete size: 3.38448
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
455 # mean insert size: 3.54669
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
456 # matchProb: 0.989211
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
457 # delOpenProb: 0.00370711
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
458 # insOpenProb: 0.00668312
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
459 # delExtendProb: 0.704534
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
460 # insExtendProb: 0.718047
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
461
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
462 # substitution percent identity: 68.1409
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
463
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
464 # count matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
465 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
466 # A 3081.6 633.731 445.81 424.08
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
467 # C 650.28 2986.2 169.49 816.1
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
468 # G 273.05 94.136 1561.4 71.9
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
469 # T 365.673 674.17 131.672 2530.4
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
470
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
471 # probability matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
472 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
473 # A 0.206684 0.0425046 0.0299007 0.0284432
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
474 # C 0.0436146 0.200286 0.0113678 0.0547362
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
475 # G 0.0183136 0.00631375 0.104724 0.00482237
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
476 # T 0.0245259 0.0452169 0.0088313 0.169715
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
477
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
478 # delExistCost: 588
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
479 # insExistCost: 541
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
480 # delExtendCost: 32
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
481 # insExtendCost: 30
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
482
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
483 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
484 # A C G T
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
485 # A 75 -70 -43 -94
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
486 # C -68 71 -132 -35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
487 # G -71 -168 146 -180
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
488 # T -100 -45 -135 88
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
489
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
490 #last -X 0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
491 #last -Q 0
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
492 #last -t4.72795
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
493 #last -a 29
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
494 #last -A 28
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
495 #last -b 2
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
496 #last -B 1
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
497 #last -s 1
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
498 #last -S 1
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
499 # score matrix (query letters = columns, reference letters = rows):
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
500 A C G T
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
501 A 4 -3 -2 -5
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
502 C -3 4 -7 -2
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents: 0
diff changeset
503 G -4 -8 7 -9
0
9a7e91fc6562 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
iuc
parents:
diff changeset
504 T -5 -2 -7 4