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comparison lastal.xml @ 6:19c265784f35 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 88d7f81768f05f490f444b646f47241cf2547b44"
author iuc
date Sat, 27 Nov 2021 10:12:45 +0000
parents 8705e0d74a0f
children eca7ac1eb423
comparison
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5:f5a5a2b39ff2 6:19c265784f35
1 <tool id="last_al" name="LASTal" version="@LAST_CONDA_VERSION@+galaxy0" profile="20.01"> 1 <tool id="last_al" name="LASTal" version="@TOOL_VERSION@+galaxy1" profile="20.01">
2 2
3 <description>finds local alignments between query sequences, and reference sequences.</description> 3 <description>finds local alignments between query sequences, and reference sequences.</description>
4 4 <expand macro="bio_tools"/>
5 <macros> 5 <macros>
6 <import>macros_last.xml</import> 6 <import>macros_last.xml</import>
7 </macros> 7 </macros>
8 8
9 <requirements> 9 <requirements>
10 <requirement type="package" version="@LAST_CONDA_VERSION@">last</requirement> 10 <requirement type="package" version="@TOOL_VERSION@">last</requirement>
11 </requirements> 11 </requirements>
12 12
13 <command detect_errors="exit_code"><![CDATA[ 13 <command detect_errors="exit_code"><![CDATA[
14 set -e -o pipefail; 14 set -e -o pipefail;
15 15
75 -T $lastal.misc_opt.T 75 -T $lastal.misc_opt.T
76 -n $lastal.misc_opt.n 76 -n $lastal.misc_opt.n
77 -w $lastal.misc_opt.w 77 -w $lastal.misc_opt.w
78 -u $lastal.misc_opt.u 78 -u $lastal.misc_opt.u
79 -g $lastal.misc_opt.g 79 -g $lastal.misc_opt.g
80 -G $lastal.misc_opt.G
80 81
81 -P \${GALAXY_SLOTS:-1} 82 -P \${GALAXY_SLOTS:-1}
82 83
83 #if $db_opts.db_opts_input == 'db' 84 #if $db_opts.db_opts_input == 'db'
84 '${"'" "'".join(str($db_opts.database.fields.path).split(","))}' 85 '${"'" "'".join(str($db_opts.database.fields.path).split(","))}'