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comparison lastal.xml @ 1:86206f93fb13 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 67b8e5adffa4015ee60b1b4a0cd220f632ba1082"
author iuc
date Wed, 22 Jul 2020 19:50:13 -0400
parents 9a7e91fc6562
children bf30030e5265
comparison
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0:9a7e91fc6562 1:86206f93fb13
1 <tool id="last_al" name="LASTal" version="@LAST_CONDA_VERSION@+galaxy0" profile="18.01"> 1 <tool id="last_al" name="LASTal" version="@LAST_CONDA_VERSION@+galaxy1" profile="18.01">
2 2
3 <description>finds local alignments between query sequences, and reference sequences.</description> 3 <description>finds local alignments between query sequences, and reference sequences.</description>
4 4
5 <macros> 5 <macros>
6 <import>macros_last.xml</import> 6 <import>macros_last.xml</import>
73 >'$outfile' 73 >'$outfile'
74 ]]></command> 74 ]]></command>
75 75
76 <inputs> 76 <inputs>
77 <expand macro="input_db"/> 77 <expand macro="input_db"/>
78 <param name="query_fasta" type="data" format="FASTA" label="Queries fasta file"/> 78 <param name="query_fasta" type="data" format="fasta,fastqsanger,fastqsolexa,fastqillumina,tabular" label="Queries FASTA file"/>
79 79
80 <section name="lastal" title="Lastal arguments" expanded="true"> 80 <section name="lastal" title="Lastal arguments" expanded="true">
81 <param argument="-Q" type="select" multiple="false" label="Input format"> 81 <param argument="-Q" type="select" multiple="false" label="Query input format">
82 <option value="0" selected="true">fasta or fastq-ignore</option> 82 <option value="0" selected="true">FASTA</option>
83 <option value="1">fastq-sanger</option> 83 <option value="1">fastq-sanger</option>
84 <option value="2">fastq-solexa</option> 84 <option value="2">fastq-solexa</option>
85 <option value="3">fastq-illumina</option> 85 <option value="3">fastq-illumina</option>
86 <option value="4">prb</option>
87 <option value="5">PSSM</option> 86 <option value="5">PSSM</option>
88 </param> 87 </param>
89 <param argument="-f" type="select" multiple="false" label="Output format"> 88 <param argument="-f" type="select" multiple="false" label="Output format">
90 <option value="MAF" selected="true">MAF</option> 89 <option value="MAF" selected="true">MAF</option>
91 <option value="TAB">TAB</option> 90 <option value="TAB">TAB</option>