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comparison lastdb.xml @ 1:86206f93fb13 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 67b8e5adffa4015ee60b1b4a0cd220f632ba1082"
author iuc
date Wed, 22 Jul 2020 19:50:13 -0400
parents 9a7e91fc6562
children bf30030e5265
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0:9a7e91fc6562 1:86206f93fb13
1 <tool id="last_db" name="LASTdb" version="@LAST_CONDA_VERSION@+galaxy0" profile="18.01"> 1 <tool id="last_db" name="LASTdb" version="@LAST_CONDA_VERSION@+galaxy1" profile="18.01">
2 2
3 <description>prepares sequences for subsequent comparison and alignment using lastal.</description> 3 <description>prepares sequences for subsequent comparison and alignment using lastal.</description>
4 4
5 <macros> 5 <macros>
6 <import>macros_last.xml</import> 6 <import>macros_last.xml</import>
34 mkdir '$outfile.files_path' && 34 mkdir '$outfile.files_path' &&
35 mv lastdb.* '$outfile.files_path' 35 mv lastdb.* '$outfile.files_path'
36 ]]></command> 36 ]]></command>
37 37
38 <inputs> 38 <inputs>
39 <param name="input_files" type="data" format="FASTA" label="Reference(s) input files" /> 39 <param name="input_files" type="data" format="fasta,fastqsanger,fastqsolexa,fastqillumina" label="Reference(s) input files" />
40 <section name="lastdb" title="Lastdb arguments" expanded="true"> 40 <section name="lastdb" title="Lastdb arguments" expanded="true">
41 <param argument="-Q" type="select" multiple="false" label="Input format"> 41 <param argument="-Q" type="select" multiple="false" label="Input format">
42 <option value="0" selected="true">fasta or fastq-ignore</option> 42 <option value="0" selected="true">FASTA</option>
43 <option value="1">fastq-sanger</option> 43 <option value="1">fastq-sanger</option>
44 <option value="2">fastq-solexa</option> 44 <option value="2">fastq-solexa</option>
45 <option value="3">fastq-illumina</option> 45 <option value="3">fastq-illumina</option>
46 </param> 46 </param>
47 47