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comparison test-data/outfile_convert.tab @ 0:9a7e91fc6562 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit c5689f5fc818d1538b2e15251c7de203c70e2219"
author iuc
date Wed, 17 Jun 2020 14:50:21 -0400
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-1:000000000000 0:9a7e91fc6562
1 # LAST version 1021
2 #
3 # a=29 b=2 A=28 B=1 e=106 d=63 x=105 y=48 z=105 D=1e+06 E=2.9693e+07
4 # R=10 u=2 s=2 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=4.80115 j=3 Q=0
5 # ref_db
6 # Reference sequences=1 normal letters=16571
7 # lambda=0.213867 K=0.208
8 #
9 # A C G T M S K W R Y B D H V
10 # A 4 -3 -2 -5 2 -3 -4 1 2 -4 -3 1 0 1
11 # C -3 4 -7 -2 2 2 -3 -2 -4 2 1 -3 1 1
12 # G -3 -8 7 -9 -5 3 3 -5 3 -9 1 1 -6 1
13 # T -5 -2 -7 4 -3 -3 2 1 -6 2 1 0 1 -4
14 # M 2 2 -4 -3 2 0 -3 0 0 0 -1 -1 0 1
15 # S -3 2 3 -4 0 2 0 -3 0 0 1 -1 -1 1
16 # K -4 -3 2 2 -4 0 2 0 -1 0 1 1 -1 -1
17 # W 1 -2 -4 1 0 -3 0 1 0 0 -1 1 0 -1
18 # R 2 -4 3 -6 0 0 -1 0 3 -5 -2 1 -1 1
19 # Y -4 2 -7 2 0 0 0 0 -5 2 1 -1 1 -1
20 # B -4 1 1 1 -1 1 1 -1 -2 1 1 0 0 -1
21 # D 1 -3 1 0 -1 -1 1 1 1 -1 0 1 0 0
22 # H 0 1 -5 1 0 -1 -1 0 -1 1 0 0 0 0
23 # V 1 1 1 -4 1 1 -1 -1 1 -1 -1 0 0 1
24 #
25 # Coordinates are 0-based. For - strand matches, coordinates
26 # in the reverse complement of the 2nd sequence are used.
27 #
28 # name start alnSize strand seqSize alignment
29 #
30 # batch 0
31 22420 humanMito 584 13529 + 16571 fuguMito 6 13709 + 16447 10,4:0,34,0:1,106,0:1,78,0:1,50,2:0,156,0:1,21,1:0,69,3:0,133,0:4,33,1:0,33,0:1,67,2:0,26,1:0,96,9:0,30,0:4,71,0:3,28,0:10,54,0:7,28,0:8,30,1:0,38,0:11,73,1:0,62,0:2,96,0:1,20,4:0,40,0:16,71,0:14,27,2:0,25,0:2,39,3:0,72,0:2,28,2:0,22,0:19,103,0:2,39,1:0,28,0:1,210,0:3,113,0:19,28,0:1,204,0:1,48,0:2,42,0:3,50,1:0,21,1:0,32,0:16,957,0:3,15,0:1,51,0:2,57,3:0,99,0:1,415,3:0,606,0:7,45,0:2,11,5:0,76,0:1,62,0:1,18,0:1,11,0:2,72,2:0,27,0:2,36,0:2,15,11:0,1532,0:9,71,0:2,26,0:3,42,0:7,697,7:0,16,5:0,57,3:0,95,0:1,48,4:0,102,0:3,1382,0:2,16,0:2,50,0:1,9,0:3,395,0:5,23,12:0,13,0:3,22,0:9,350,10:0,24,0:8,17,0:5,1285,0:7,14,0:2,30,0:5,25,0:1,25,0:1,86,0:2,41,0:13,541,0:3,880,0:3,189,0:3,65 EG2=0 E=0
32 2873 humanMito 14432 1601 + 16571 fuguMito 14029 1605 + 16447 104,0:5,44,5:0,1297,1:0,27,0:1,16,0:7,29,3:0,75 EG2=3e-250 E=1.3e-259
33 178 humanMito 16456 71 + 16571 fuguMito 15935 71 + 16447 71 EG2=6.1 E=3.3e-09
34 118 humanMito 5826 49 + 16571 fuguMito 4680 49 - 16447 49 EG2=2.3e+06 E=0.0012
35 # Query sequences=1