Mercurial > repos > iuc > last

diff lastdb.xml @ 5:f5a5a2b39ff2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 4568799de240022f4058ec1602e08f536916e2af"
author iuc
date Thu, 25 Mar 2021 20:53:27 +0000
parents 8705e0d74a0f
children 19c265784f35
line wrap: on
line diff
--- a/lastdb.xml	Wed Mar 24 22:36:50 2021 +0000
+++ b/lastdb.xml	Thu Mar 25 20:53:27 2021 +0000
@@ -34,7 +34,9 @@
         -R $lastdb.repeats.uppercase$lastdb.repeats.simple_repeat 
         $lastdb.repeats.sm_lower 
         -S $lastdb.lastdb_advanced.S
-        -u $lastdb.lastdb_advanced.seeds.u
+        #if $lastdb.lastdb_advanced.seeds.u != ''
+            -u $lastdb.lastdb_advanced.seeds.u
+        #end if
         -w $lastdb.lastdb_advanced.seeds.w
         #if $lastdb.lastdb_advanced.seeds.W
             -W $lastdb.lastdb_advanced.seeds.W
@@ -90,7 +92,8 @@
                 </param>
 
                 <conditional name="seeds">
-                    <param argument="-u" type="select" multiple="false" optional="true" label="Specify a seeding scheme.">
+                    <param argument="-u" type="select" multiple="false" label="Specify a seeding scheme.">
+                        <option value="">Do not apply seeding scheme</option>
                         <option value="BISF">BISF</option>
                         <option value="BISR">BISR</option>
                         <option value="MAM4">MAM4</option>
@@ -100,6 +103,7 @@
                         <option value="YASS" selected="true">YASS</option>
                         <!-- Add filename option -->
                     </param>
+                    <when value=""/>
                     <when value="BISF">
                         <expand macro="step_macro" step="2"/>
                     </when>
@@ -171,6 +175,7 @@
             <section name="lastdb_advanced">
                 <conditional name="seeds">
                     <param name="u" value="MURPHY10"/>
+                </conditional>
             </section>
             <output name="outfile" compare="contains" file="hedgdb.lastdb" ftype="lastdb">
                 <extra_files type="file" value="hedgdb.bck" name="lastdb.bck" compare="sim_size" delta="1"/>
@@ -192,7 +197,7 @@
                     <param name="sm_lower" value="true"/>
                 </section>
             </section>
-            <output name="outfile" compare="contains" file="hedgdb.lastdb" ftype="lastdb">
+            <output name="outfile" compare="contains" file="humdb-sanger.lastdb" ftype="lastdb">
                 <extra_files type="file" value="humdb-sanger.bck" name="lastdb.bck" compare="sim_size" delta="1"/>
                 <extra_files type="file" value="humdb-sanger.des" name="lastdb.des"/>
                 <extra_files type="file" value="humdb-sanger.prj" name="lastdb.prj" lines_diff="2"/>