--- a/test-data/last_align_prot.maf	Wed Mar 24 22:36:50 2021 +0000
+++ b/test-data/last_align_prot.maf	Thu Mar 25 20:53:27 2021 +0000
@@ -2,7 +2,7 @@
 #
 # a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09
 # R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
-# /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/hedgdb
+# /home/berntm/.planemo/planemo_tmp_vt3pko3h/test-data/hedgdb
 # Reference sequences=1 normal letters=411
 # lambda=0.305935 K=0.102404
 #
@@ -39,4 +39,120 @@
 # name start alnSize strand seqSize alignment
 #
 # batch 0
+a score=729 EG2=1.4e-80 E=1.2e-101
+s NP_002172.2    13 264 + 411 LVLLLLLVVPA----AWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLL
+s NP_001034065.1 66 265 + 471 LVALLLIVLPMVFSPAHSCGPGRGLGRHRA--RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHT-DGGAVLTVTPAHLV
+
+a score=131 EG2=0.4 E=4.1e-14
+s NP_002172.2    293 95 + 411 FASHVQPGQYVLVAGVPG--LQPARVAAVSTHVALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFHSLAWGSWTPG-EGVHWYPQLL
+s NP_001034065.1 344 96 + 471 FADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLE--AWLPAKEQLHSSPKVV
+
+a score=50 EG2=2.3e+10 E=0.0037
+s NP_002172.2    379 23 + 411 GVHWYPQLLYRLGRLLLEEGSFH
+s NP_001034065.1 447 23 + 471 GIHWYANALYKVKDYVLPQSWRH
+
+a score=41 EG2=3.7e+11 E=0.06
+s NP_002172.2    91 34 + 411 KDEENTGADRLMTQRCKDRLNSLAISVMNQWPGV
+s NP_001034065.1 44 34 + 471 QEETQTMRHIAHTQRCLSRLTSLVALLLIVLPMV
+
+a score=32 EG2=5.7e+12 E=0.99
+s NP_002172.2    183 24 + 411 AHVHCSVKSEHSAAAKTGGCFPAG
+s NP_001034065.1 252 24 + 471 SHVHGCFTPESTALLESGVRKPLG
+
+a score=31 EG2=7.8e+12 E=1.3
+s NP_002172.2    146 21 + 411 EGRAVDITTSDRDRNKYGLLA
+s NP_001034065.1 149 21 + 471 EGTGADRLMSKRCKEKLNVLA
+
+a score=31 EG2=7.8e+12 E=1.3
+s NP_002172.2    394 16 + 411 LLEEGSFHPLGMSGAG
+s NP_001034065.1 265 16 + 471 LLESGVRKPLGELSIG
+
+a score=30 EG2=1.1e+13 E=1.8
+s NP_002172.2     23 13 + 411 AAWGCGPGRVVGS
+s NP_001034065.1 409 13 + 471 AHWGLAPMRLLST
+
+a score=30 EG2=1.1e+13 E=1.8
+s NP_002172.2    180 18 + 411 ESKAHVHCSVKSEHSAAA
+s NP_001034065.1  20 18 + 471 DAKCHSSSSSSSSKSAAS
+
+a score=28 EG2=2e+13 E=3.4
+s NP_002172.2    167 20 + 411 RLAVEAGFDWVYYESKAHVH
+s NP_001034065.1 180 20 + 471 RLLVTESWDEDYHHGQESLH
+
+a score=28 EG2=2e+13 E=3.4
+s NP_002172.2    181 20 + 411 SKAHVHCSVKSEHSAAAKTG
+s NP_001034065.1 428 20 + 471 AKEQLHSSPKVVSSAQQQNG
+
+a score=26 EG2=3.6e+13 E=6.4
+s NP_002172.2    233 17 + 411 EDGSPTFSDVLIFLDRE
+s NP_001034065.1 133 17 + 471 KDLVPNYNRDILFRDEE
+
+a score=25 EG2=4.9e+13 E=8.7
+s NP_002172.2    236 14 + 411 SPTFSDVLIFLDRE
+s NP_001034065.1 129 14 + 471 SPKFKDLVPNYNRD
+
+a score=24 EG2=6.6e+13 E=12
+s NP_002172.2     10 16 + 411 HFCLVLLLLLVVPAAW
+s NP_001034065.1 410 16 + 471 HWGLAPMRLLSTLEAW
+
+a score=24 EG2=6.6e+13 E=12
+s NP_002172.2     26 23 + 411 GCGPGRVVGSRRRPPRKLVPLAY
+s NP_001034065.1 150 21 + 471 GTGADRLMSKRCK--EKLNVLAY
+
+a score=24 EG2=6.6e+13 E=12
+s NP_002172.2     48 32 + 411 YKQFSPNVPEKTLGASGRYEGKIARSSERFKE
+s NP_001034065.1 132 32 + 471 FKDLVPNYNRDILFRDEEGTGADRLMSKRCKE
+
+a score=24 EG2=6.6e+13 E=12
+s NP_002172.2    106 27 + 411 CKDRLNSLAISVMNQWPGVKLRVTEGW
+s NP_001034065.1 399 27 + 471 CYAVINSQSLAHWGLAPMRLLSTLEAW
+
+a score=24 EG2=6.6e+13 E=12
+s NP_002172.2    143 8 + 411 LHYEGRAV
+s NP_001034065.1 314 8 + 471 LHTDGGAV
+
+a score=24 EG2=6.6e+13 E=12
+s NP_002172.2    157 14 + 411 RDRNKYGLLARLAV
+s NP_001034065.1  94 14 + 471 RARNLYPLVLKQTI
+
+a score=23 EG2=9e+13 E=16
+s NP_002172.2     20 6 + 411 VVPAAW
+s NP_001034065.1 462 6 + 471 VLPQSW
+
+a score=23 EG2=9e+13 E=16
+s NP_002172.2    146 22 + 411 EGRAVDITTSDRDRNKYGLLAR
+s NP_001034065.1 336 22 + 471 ESQKLTFVFADRIEEKNQVLVR
+
+a score=23 EG2=9e+13 E=16
+s NP_002172.2    173 11 + 411 GFDWVYYESKA
+s NP_001034065.1 194 11 + 471 GQESLHYEGRA
+
+a score=23 EG2=9e+13 E=16
+s NP_002172.2    207 15 + 411 AQVRLESGARVALSA
+s NP_001034065.1 428 15 + 471 AKEQLHSSPKVVSSA
+
+a score=23 EG2=9e+13 E=16
+s NP_002172.2    317 14 + 411 AAVSTHVALGAYAP
+s NP_001034065.1 248 13 + 471 SSISSHVH-GCFTP
+
+a score=23 EG2=9e+13 E=16
+s NP_002172.2    331 13 + 411 LTKHGTLVVEDVV
+s NP_001034065.1 286 13 + 471 MTANGQAVYSEVI
+
+a score=23 EG2=9e+13 E=16
+s NP_002172.2    361 11 + 411 WP-LRLFHSLAW
+s NP_001034065.1 176 12 + 471 WPGIRLLVTESW
+
+a score=22 EG2=1.2e+14 E=22
+s NP_002172.2    264 22 + 411 PPRRLALTPAHLLFTADNHTEP
+s NP_001034065.1 415 22 + 471 PMRLLSTLEAWLPAKEQLHSSP
+
+a score=22 EG2=1.2e+14 E=22
+s NP_002172.2    268 7 + 411 LALTPAH
+s NP_001034065.1  76 7 + 471 MVFSPAH
+
+a score=22 EG2=1.2e+14 E=22
+s NP_002172.2    277 21 + 411 FTADNHTEPAARFRATFASHV
+s NP_001034065.1 234 21 + 471 YVSRRHIYCSVKSDSSISSHV
+
 # Query sequences=1