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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit ddb5e058a7877e627ed24ef8cb9a046ccb450cb4
author iuc
date Mon, 23 Oct 2023 20:45:02 +0000
parents f5a5a2b39ff2
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# LAST version 1205
#
# a=11 b=2 A=11 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=2.73494e+09
# R=10 u=0 s=1 S=0 M=0 T=0 m=10 l=1 L=999999999 n=10 k=1 w=1000 t=3.08611 j=3 Q=0
# /home/berntm/.planemo/planemo_tmp_vt3pko3h/test-data/hedgdb
# Reference sequences=1 normal letters=411
# lambda=0.305935 K=0.102404
#
#    A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
# A  4 -1 -2 -2  0 -1 -1  0 -2 -1 -1 -1 -1 -2 -1  1  0 -3 -2  0 -2 -1 -1 -1 -4
# R -1  5  0 -2 -3  1  0 -2  0 -3 -2  2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2  0 -1 -4
# N -2  0  6  1 -3  0  0  0  1 -3 -3  0 -2 -3 -2  1  0 -4 -2 -3  4 -3  0 -1 -4
# D -2 -2  1  6 -3  0  2 -1 -1 -3 -4 -1 -3 -3 -1  0 -1 -4 -3 -3  4 -3  1 -1 -4
# C  0 -3 -3 -3  9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4
# Q -1  1  0  0 -3  5  2 -2  0 -3 -2  1  0 -3 -1  0 -1 -2 -1 -2  0 -2  4 -1 -4
# E -1  0  0  2 -4  2  5 -2  0 -3 -3  1 -2 -3 -1  0 -1 -3 -2 -2  1 -3  4 -1 -4
# G  0 -2  0 -1 -3 -2 -2  6 -2 -4 -4 -2 -3 -3 -2  0 -2 -2 -3 -3 -1 -4 -2 -1 -4
# H -2  0  1 -1 -3  0  0 -2  8 -3 -3 -1 -2 -1 -2 -1 -2 -2  2 -3  0 -3  0 -1 -4
# I -1 -3 -3 -3 -1 -3 -3 -4 -3  4  2 -3  1  0 -3 -2 -1 -3 -1  3 -3  3 -3 -1 -4
# L -1 -2 -3 -4 -1 -2 -3 -4 -3  2  4 -2  2  0 -3 -2 -1 -2 -1  1 -4  3 -3 -1 -4
# K -1  2  0 -1 -3  1  1 -2 -1 -3 -2  5 -1 -3 -1  0 -1 -3 -2 -2  0 -3  1 -1 -4
# M -1 -1 -2 -3 -1  0 -2 -3 -2  1  2 -1  5  0 -2 -1 -1 -1 -1  1 -3  2 -1 -1 -4
# F -2 -3 -3 -3 -2 -3 -3 -3 -1  0  0 -3  0  6 -4 -2 -2  1  3 -1 -3  0 -3 -1 -4
# P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4  7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4
# S  1 -1  1  0 -1  0  0  0 -1 -2 -2  0 -1 -2 -1  4  1 -3 -2 -2  0 -2  0 -1 -4
# T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1  1  5 -2 -2  0 -1 -1 -1 -1 -4
# W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1  1 -4 -3 -2 11  2 -3 -4 -2 -2 -1 -4
# Y -2 -2 -2 -3 -2 -1 -2 -3  2 -1 -1 -2 -1  3 -3 -2 -2  2  7 -1 -3 -1 -2 -1 -4
# V  0 -3 -3 -3 -1 -2 -2 -3 -3  3  1 -2  1 -1 -2 -2  0 -3 -1  4 -3  2 -2 -1 -4
# B -2 -1  4  4 -3  0  1 -1  0 -3 -4  0 -3 -3 -2  0 -1 -4 -3 -3  4 -3  0 -1 -4
# J -1 -2 -3 -3 -1 -2 -3 -4 -3  3  3 -3  2  0 -3 -2 -1 -2 -1  2 -3  3 -3 -1 -4
# Z -1  0  0  1 -3  4  4 -2  0 -3 -3  1 -1 -3 -1  0 -1 -2 -2 -2  0 -3  4 -1 -4
# X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4
# * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# batch 0
a score=729 EG2=1.4e-80 E=1.2e-101
s NP_002172.2    13 264 + 411 LVLLLLLVVPA----AWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLL
s NP_001034065.1 66 265 + 471 LVALLLIVLPMVFSPAHSCGPGRGLGRHRA--RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSDSSISSHVHGCFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHT-DGGAVLTVTPAHLV

a score=131 EG2=0.4 E=4.1e-14
s NP_002172.2    293 95 + 411 FASHVQPGQYVLVAGVPG--LQPARVAAVSTHVALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLRLFHSLAWGSWTPG-EGVHWYPQLL
s NP_001034065.1 344 96 + 471 FADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYAVINSQSLAHWGLAPMRLLSTLE--AWLPAKEQLHSSPKVV

a score=50 EG2=2.3e+10 E=0.0037
s NP_002172.2    379 23 + 411 GVHWYPQLLYRLGRLLLEEGSFH
s NP_001034065.1 447 23 + 471 GIHWYANALYKVKDYVLPQSWRH

a score=41 EG2=3.7e+11 E=0.06
s NP_002172.2    91 34 + 411 KDEENTGADRLMTQRCKDRLNSLAISVMNQWPGV
s NP_001034065.1 44 34 + 471 QEETQTMRHIAHTQRCLSRLTSLVALLLIVLPMV

a score=32 EG2=5.7e+12 E=0.99
s NP_002172.2    183 24 + 411 AHVHCSVKSEHSAAAKTGGCFPAG
s NP_001034065.1 252 24 + 471 SHVHGCFTPESTALLESGVRKPLG

a score=31 EG2=7.8e+12 E=1.3
s NP_002172.2    146 21 + 411 EGRAVDITTSDRDRNKYGLLA
s NP_001034065.1 149 21 + 471 EGTGADRLMSKRCKEKLNVLA

a score=31 EG2=7.8e+12 E=1.3
s NP_002172.2    394 16 + 411 LLEEGSFHPLGMSGAG
s NP_001034065.1 265 16 + 471 LLESGVRKPLGELSIG

a score=30 EG2=1.1e+13 E=1.8
s NP_002172.2     23 13 + 411 AAWGCGPGRVVGS
s NP_001034065.1 409 13 + 471 AHWGLAPMRLLST

a score=30 EG2=1.1e+13 E=1.8
s NP_002172.2    180 18 + 411 ESKAHVHCSVKSEHSAAA
s NP_001034065.1  20 18 + 471 DAKCHSSSSSSSSKSAAS

a score=28 EG2=2e+13 E=3.4
s NP_002172.2    167 20 + 411 RLAVEAGFDWVYYESKAHVH
s NP_001034065.1 180 20 + 471 RLLVTESWDEDYHHGQESLH

a score=28 EG2=2e+13 E=3.4
s NP_002172.2    181 20 + 411 SKAHVHCSVKSEHSAAAKTG
s NP_001034065.1 428 20 + 471 AKEQLHSSPKVVSSAQQQNG

a score=26 EG2=3.6e+13 E=6.4
s NP_002172.2    233 17 + 411 EDGSPTFSDVLIFLDRE
s NP_001034065.1 133 17 + 471 KDLVPNYNRDILFRDEE

a score=25 EG2=4.9e+13 E=8.7
s NP_002172.2    236 14 + 411 SPTFSDVLIFLDRE
s NP_001034065.1 129 14 + 471 SPKFKDLVPNYNRD

a score=24 EG2=6.6e+13 E=12
s NP_002172.2     10 16 + 411 HFCLVLLLLLVVPAAW
s NP_001034065.1 410 16 + 471 HWGLAPMRLLSTLEAW

a score=24 EG2=6.6e+13 E=12
s NP_002172.2     26 23 + 411 GCGPGRVVGSRRRPPRKLVPLAY
s NP_001034065.1 150 21 + 471 GTGADRLMSKRCK--EKLNVLAY

a score=24 EG2=6.6e+13 E=12
s NP_002172.2     48 32 + 411 YKQFSPNVPEKTLGASGRYEGKIARSSERFKE
s NP_001034065.1 132 32 + 471 FKDLVPNYNRDILFRDEEGTGADRLMSKRCKE

a score=24 EG2=6.6e+13 E=12
s NP_002172.2    106 27 + 411 CKDRLNSLAISVMNQWPGVKLRVTEGW
s NP_001034065.1 399 27 + 471 CYAVINSQSLAHWGLAPMRLLSTLEAW

a score=24 EG2=6.6e+13 E=12
s NP_002172.2    143 8 + 411 LHYEGRAV
s NP_001034065.1 314 8 + 471 LHTDGGAV

a score=24 EG2=6.6e+13 E=12
s NP_002172.2    157 14 + 411 RDRNKYGLLARLAV
s NP_001034065.1  94 14 + 471 RARNLYPLVLKQTI

a score=23 EG2=9e+13 E=16
s NP_002172.2     20 6 + 411 VVPAAW
s NP_001034065.1 462 6 + 471 VLPQSW

a score=23 EG2=9e+13 E=16
s NP_002172.2    146 22 + 411 EGRAVDITTSDRDRNKYGLLAR
s NP_001034065.1 336 22 + 471 ESQKLTFVFADRIEEKNQVLVR

a score=23 EG2=9e+13 E=16
s NP_002172.2    173 11 + 411 GFDWVYYESKA
s NP_001034065.1 194 11 + 471 GQESLHYEGRA

a score=23 EG2=9e+13 E=16
s NP_002172.2    207 15 + 411 AQVRLESGARVALSA
s NP_001034065.1 428 15 + 471 AKEQLHSSPKVVSSA

a score=23 EG2=9e+13 E=16
s NP_002172.2    317 14 + 411 AAVSTHVALGAYAP
s NP_001034065.1 248 13 + 471 SSISSHVH-GCFTP

a score=23 EG2=9e+13 E=16
s NP_002172.2    331 13 + 411 LTKHGTLVVEDVV
s NP_001034065.1 286 13 + 471 MTANGQAVYSEVI

a score=23 EG2=9e+13 E=16
s NP_002172.2    361 11 + 411 WP-LRLFHSLAW
s NP_001034065.1 176 12 + 471 WPGIRLLVTESW

a score=22 EG2=1.2e+14 E=22
s NP_002172.2    264 22 + 411 PPRRLALTPAHLLFTADNHTEP
s NP_001034065.1 415 22 + 471 PMRLLSTLEAWLPAKEQLHSSP

a score=22 EG2=1.2e+14 E=22
s NP_002172.2    268 7 + 411 LALTPAH
s NP_001034065.1  76 7 + 471 MVFSPAH

a score=22 EG2=1.2e+14 E=22
s NP_002172.2    277 21 + 411 FTADNHTEPAARFRATFASHV
s NP_001034065.1 234 21 + 471 YVSRRHIYCSVKSDSSISSHV

# Query sequences=1