Mercurial > repos > iuc > length_and_gc_content
comparison macros.xml @ 2:e3ba567abdf5 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/length_and_gc_content commit 7b6b07d22f3e6fed77b2c237de2b0d96fa939711"
| author | iuc |
|---|---|
| date | Fri, 11 Mar 2022 14:08:11 +0000 |
| parents | |
| children |
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| 1:f088370d2a3c | 2:e3ba567abdf5 |
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| 1 <macros> | |
| 2 <xml name="requirements"> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.7.1">r-optparse</requirement> | |
| 5 <requirement type="package" version="1.14.2">r-data.table</requirement> | |
| 6 <requirement type="package" version="1.54.0">bioconductor-rtracklayer</requirement> | |
| 7 </requirements> | |
| 8 </xml> | |
| 9 <xml name="fasta"> | |
| 10 <conditional name="fasta_file"> | |
| 11 <param name="fastaSource" type="select" label="Select a built-in FASTA or one from your history" help="Choose history if you don't see the correct FASTA. The FASTA must be the same genome version as the GTF."> | |
| 12 <option value="indexed" selected="true">Use a built-in FASTA </option> | |
| 13 <option value="history">Use a FASTA from history</option> | |
| 14 </param> | |
| 15 <when value="indexed"> | |
| 16 <param name="fasta_pre_installed" type="select" help="Select the FASTA file from a list of pre-installed genomes" label="Select a FASTA file"> | |
| 17 <options from_data_table="all_fasta"> | |
| 18 <filter type="sort_by" column="2" /> | |
| 19 </options> | |
| 20 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> | |
| 21 </param> | |
| 22 </when> | |
| 23 <when value="history"> | |
| 24 <param name="fasta_history" type="data" format="fasta" label="Select a FASTA file that matches the supplied GTF file" /> | |
| 25 </when> | |
| 26 </conditional> | |
| 27 </xml> | |
| 28 </macros> |