Mercurial > repos > iuc > length_and_gc_content
diff get_length_and_gc_content.r @ 1:f088370d2a3c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/length_and_gc_content commit 0a56599c36b4968095ec5a3cb589f94fb139466c
| author | iuc |
|---|---|
| date | Sun, 28 Jan 2018 04:04:58 -0500 |
| parents | 2ca1baabdae0 |
| children | e3ba567abdf5 |
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--- a/get_length_and_gc_content.r Thu Nov 17 16:41:06 2016 -0500 +++ b/get_length_and_gc_content.r Sun Jan 28 04:04:58 2018 -0500 @@ -15,9 +15,9 @@ option_list <- list( make_option(c("-g","--gtf"), type="character", help="Input GTF file with gene / exon information."), - make_option(c("-f","--fasta"), type="character", default=FALSE, help="Fasta file that corresponds to the supplied GTF."), - make_option(c("-l","--length"), type="character", default=FALSE, help="Output file with gene name and length."), - make_option(c("-gc","--gc_content"), type="character", default=FALSE, help="Output file with gene name and GC content.") + make_option(c("-f","--fasta"), type="character", default=FALSE, help="FASTA file that corresponds to the supplied GTF."), + make_option(c("-l","--length"), type="character", default=FALSE, help="Output file with Gene ID and length."), + make_option(c("-gc","--gc_content"), type="character", default=FALSE, help="Output file with Gene ID and GC content.") ) parser <- OptionParser(usage = "%prog [options] file", option_list=option_list)