Mercurial > repos > iuc > limma_voom

comparison limma_voom.xml @ 24:32511f586472 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/limma_voom commit ac346e409fbf40ffa7ce155dfa0abbf2bfb8adfa"
author iuc
date Mon, 13 Dec 2021 17:13:31 +0000
parents e827f9aae031
children d6f5fa4ee473
comparison
equal deleted inserted replaced
23:e827f9aae031 24:32511f586472
1 <tool id="limma_voom" name="limma" version="@TOOL_VERSION@+galaxy2"> 1 <tool id="limma_voom" name="limma" version="@TOOL_VERSION@+galaxy0">
2 <description> 2 <description>
3 Perform differential expression with limma-voom or limma-trend 3 Perform differential expression with limma-voom or limma-trend
4 </description> 4 </description>
5 <macros> 5 <macros>
6 <token name="@TOOL_VERSION@">3.48.0</token> 6 <token name="@TOOL_VERSION@">3.50.0</token>
7 </macros> 7 </macros>
8 <xrefs> 8 <xrefs>
9 <xref type="bio.tools">limma</xref> 9 <xref type="bio.tools">limma</xref>
10 </xrefs> 10 </xrefs>
11 <edam_topics> 11 <edam_topics>
16 <edam_operation>operation_3223</edam_operation> 16 <edam_operation>operation_3223</edam_operation>
17 </edam_operations> 17 </edam_operations>
18 18
19 <requirements> 19 <requirements>
20 <requirement type="package" version="@TOOL_VERSION@">bioconductor-limma</requirement> 20 <requirement type="package" version="@TOOL_VERSION@">bioconductor-limma</requirement>
21 <requirement type="package" version="3.34.0">bioconductor-edger</requirement> 21 <requirement type="package" version="3.36.0">bioconductor-edger</requirement>
22 <requirement type="package" version="1.4.36">r-statmod</requirement> 22 <requirement type="package" version="1.4.36">r-statmod</requirement>
23 <requirement type="package" version="1.1.1">r-scales</requirement> 23 <requirement type="package" version="1.1.1">r-scales</requirement>
24 <requirement type="package" version="0.2.20">r-rjson</requirement> 24 <requirement type="package" version="0.2.20">r-rjson</requirement>
25 <requirement type="package" version="1.20.3">r-getopt</requirement> 25 <requirement type="package" version="1.20.3">r-getopt</requirement>
26 <requirement type="package" version="3.1.1">r-gplots</requirement> 26 <requirement type="package" version="3.1.1">r-gplots</requirement>
27 <requirement type="package" version="2.2.0">bioconductor-glimma</requirement> 27 <requirement type="package" version="2.4.0">bioconductor-glimma</requirement>
28 </requirements> 28 </requirements>
29 29
30 <version_command><![CDATA[ 30 <version_command><![CDATA[
31 echo $(R --version | grep version | grep -v GNU)", limma version" $(R --vanilla --slave -e "library(limma); cat(sessionInfo()\$otherPkgs\$limma\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", edgeR version" $(R --vanilla --slave -e "library(edgeR); cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", statmod version" $(R --vanilla --slave -e "library(statmod); cat(sessionInfo()\$otherPkgs\$statmod\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", scales version" $(R --vanilla --slave -e "library(scales); cat(sessionInfo()\$otherPkgs\$scales\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", rjson version" $(R --vanilla --slave -e "library(rjson); cat(sessionInfo()\$otherPkgs\$rjson\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", gplots version" $(R --vanilla --slave -e "library(gplots); cat(sessionInfo()\$otherPkgs\$gplots\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", Glimma version" $(R --vanilla --slave -e "library(Glimma); cat(sessionInfo()\$otherPkgs\$Glimma\$Version)" 2> /dev/null | grep -v -i "WARNING: ") 31 echo $(R --version | grep version | grep -v GNU)", limma version" $(R --vanilla --slave -e "library(limma); cat(sessionInfo()\$otherPkgs\$limma\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", edgeR version" $(R --vanilla --slave -e "library(edgeR); cat(sessionInfo()\$otherPkgs\$edgeR\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", statmod version" $(R --vanilla --slave -e "library(statmod); cat(sessionInfo()\$otherPkgs\$statmod\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", scales version" $(R --vanilla --slave -e "library(scales); cat(sessionInfo()\$otherPkgs\$scales\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", rjson version" $(R --vanilla --slave -e "library(rjson); cat(sessionInfo()\$otherPkgs\$rjson\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", gplots version" $(R --vanilla --slave -e "library(gplots); cat(sessionInfo()\$otherPkgs\$gplots\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", Glimma version" $(R --vanilla --slave -e "library(Glimma); cat(sessionInfo()\$otherPkgs\$Glimma\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
32 ]]></version_command> 32 ]]></version_command>