Mercurial > repos > iuc > limma_voom

diff limma_voom.xml @ 21:58c35179ebf0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/limma_voom commit 127882bd6729d92500ce2a7a51eb5f8949a4c2b5"
author iuc
date Fri, 04 Jun 2021 20:37:04 +0000
parents 0921444c832d
children 708348a17fa1
line wrap: on
line diff
--- a/limma_voom.xml	Wed May 29 10:31:41 2019 -0400
+++ b/limma_voom.xml	Fri Jun 04 20:37:04 2021 +0000
@@ -1,17 +1,27 @@
-<tool id="limma_voom" name="limma" version="3.38.3+galaxy3">
+<tool id="limma_voom" name="limma" version="3.48.0">
     <description>
         Perform differential expression with limma-voom or limma-trend
     </description>
+    <xrefs>
+        <xref type="bio.tools">limma</xref>
+    </xrefs>
+    <edam_topics>
+        <edam_topic>topic_3308</edam_topic>
+    </edam_topics>
+    <edam_operations>
+        <edam_operation>operation_3563</edam_operation>
+        <edam_operation>operation_3223</edam_operation>
+    </edam_operations>
 
     <requirements>
-        <requirement type="package" version="3.38.3">bioconductor-limma</requirement>
-        <requirement type="package" version="3.24.1">bioconductor-edger</requirement>
-        <requirement type="package" version="1.4.30">r-statmod</requirement>
-        <requirement type="package" version="1.0.0">r-scales</requirement>
+        <requirement type="package" version="3.48.0">bioconductor-limma</requirement>
+        <requirement type="package" version="3.34.0">bioconductor-edger</requirement>
+        <requirement type="package" version="1.4.36">r-statmod</requirement>
+        <requirement type="package" version="1.1.1">r-scales</requirement>
         <requirement type="package" version="0.2.20">r-rjson</requirement>
-        <requirement type="package" version="1.20.2">r-getopt</requirement>
-        <requirement type="package" version="3.0.1">r-gplots</requirement>
-        <requirement type="package" version="1.10.0">bioconductor-glimma</requirement>
+        <requirement type="package" version="1.20.3">r-getopt</requirement>
+        <requirement type="package" version="3.1.1">r-gplots</requirement>
+        <requirement type="package" version="2.2.0">bioconductor-glimma</requirement>
     </requirements>
 
     <version_command><![CDATA[