Mercurial > repos > iuc > lofreq_call

diff lofreq_call.xml @ 8:b11e8e9c23bf draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq commit 814935de92514901b397ad335e9a43dba728973f
author iuc
date Wed, 02 Oct 2024 08:20:25 +0000
parents 4805fe3d8fda
children
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--- a/lofreq_call.xml	Wed Jul 06 09:25:57 2022 +0000
+++ b/lofreq_call.xml	Wed Oct 02 08:20:25 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="lofreq_call" name="Call variants" version="@TOOL_VERSION@+galaxy2" profile="18.01">
+<tool id="lofreq_call" name="Call variants" version="@TOOL_VERSION@+galaxy3" profile="18.01">
     <description>with LoFreq</description>
     <macros>
         <import>macros.xml</import>
@@ -91,7 +91,7 @@
 
         ## in case of errors add the log files produced
         ## by the parallel workers to stderr
-        || (tool_exit_code=\$? && cat "\$TMPDIR/lofreq2_call_parallel*/*.log" 1>&2 && exit \$tool_exit_code)
+        || (tool_exit_code=\$? && cat "\$TMPDIR"/lofreq2_call_parallel*/*.log 1>&2 && exit \$tool_exit_code)
 
         ## work around a bug in lofreq call-parallel
         ## https://github.com/CSB5/lofreq/issues/85