Mercurial > repos > iuc > lofreq_filter
changeset 1:fdba1586551d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq commit 9e41ac63171c3e3a6fd2b4d018d0c60c9f1fbae1"
| author | iuc |
|---|---|
| date | Fri, 31 Jan 2020 06:18:08 -0500 |
| parents | 6f9ffff040ce |
| children | 9cb929f21cfa |
| files | lofreq_filter.xml test-data/viterbi-out1.bam |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/lofreq_filter.xml Tue Dec 17 17:26:32 2019 -0500 +++ b/lofreq_filter.xml Fri Jan 31 06:18:08 2020 -0500 @@ -1,4 +1,4 @@ -<tool id="lofreq_filter" name="Lofreq filter" version="@TOOL_VERSION@"> +<tool id="lofreq_filter" name="Lofreq filter" version="@TOOL_VERSION@+galaxy1"> <description>called variants posteriorly</description> <macros> <import>macros.xml</import> @@ -141,10 +141,10 @@ </section> <section name="af" title="Allele frequency filter options" expanded="True" help="You can specify a range of acceptable allele frequencies at variant sites by setting minimum and maximum AF values. Set either value to zero to make the range unbounded on the corresponding side, or disable filtering based on allele frequency by setting both values to zero."> - <param argument="-a" name="af_min" type="float" min="0" value="0" + <param argument="-a" name="af_min" type="float" min="0" max="1" value="0" label="Minimum allele frequency" help="To keep a variant its allele needs to be observed at this frequency at least." /> - <param argument="-A" name="af_max" type="float" min="0" value="0" + <param argument="-A" name="af_max" type="float" min="0" max="1" value="0" label="Maximum allele frequency" help="To keep a variant its allele is allowed to be observed at this frequency at most." /> </section>