Mercurial > repos > iuc > lofreq_indelqual

comparison lofreq_indelqual.xml @ 6:971e07ca4456 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq commit 3751719cd03b8380954e2231cf91496c863056e2
author iuc
date Wed, 06 Jul 2022 09:26:48 +0000
parents 426d707dfc47
children
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5:426d707dfc47 6:971e07ca4456
1 <tool id="lofreq_indelqual" name="Insert indel qualities" version="@TOOL_VERSION@+galaxy0" profile="18.01"> 1 <tool id="lofreq_indelqual" name="Insert indel qualities" version="@TOOL_VERSION@+galaxy1" profile="18.01">
2 <description>into a BAM file</description> 2 <description>into a BAM file</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
45 <test> 45 <test>
46 <param name="reads" ftype="bam" value="lofreq-in1.bam" /> 46 <param name="reads" ftype="bam" value="lofreq-in1.bam" />
47 <param name="selector" value="uniform" /> 47 <param name="selector" value="uniform" />
48 <param name="insertions" value="20" /> 48 <param name="insertions" value="20" />
49 <param name="deletions" value="30" /> 49 <param name="deletions" value="30" />
50 <output name="output" file="indelqual-out1.bam" /> 50 <output name="output" file="indelqual-out1.bam" ftype="bam" />
51 </test> 51 </test>
52 <test> 52 <test>
53 <param name="reads" ftype="bam" value="lofreq-in1.bam" /> 53 <param name="reads" ftype="bam" value="lofreq-in1.bam" />
54 <param name="selector" value="dindel" /> 54 <param name="selector" value="dindel" />
55 <param name="ref_selector" value="history" /> 55 <param name="ref_selector" value="history" />
56 <param name="ref" ftype="fasta" value="pBR322.fa" /> 56 <param name="ref" ftype="fasta" value="pBR322.fa" />
57 <output name="output" file="indelqual-out2.bam" /> 57 <output name="output" file="indelqual-out2.bam" ftype="bam" />
58 </test> 58 </test>
59 <test> 59 <test>
60 <param name="reads" ftype="bam" value="lofreq-in1.bam" /> 60 <param name="reads" ftype="bam" value="lofreq-in1.bam" />
61 <param name="selector" value="uniform" /> 61 <param name="selector" value="uniform" />
62 <param name="insertions" value="20" /> 62 <param name="insertions" value="20" />
63 <output name="output" file="indelqual-out3.bam" /> 63 <output name="output" file="indelqual-out3.bam" ftype="bam" />
64 </test> 64 </test>
65 </tests> 65 </tests>
66 <help><![CDATA[ 66 <help><![CDATA[
67 Insert indel qualities into BAM file 67 Insert indel qualities into BAM file
68 68