annotate test-data/predictd_on_ChIP_200K_and_Control_200K.txt @ 12:38769345062e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 09ef7ee96fadeef22273029ea23d1e140ce96737
author iuc
date Thu, 22 Mar 2018 09:43:37 -0400
parents 6d4babad010f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
1 # read alignment files...
fe62ba547975 Uploaded
iuc
parents:
diff changeset
2 # read treatment tags...
fe62ba547975 Uploaded
iuc
parents:
diff changeset
3 Detected format is
fe62ba547975 Uploaded
iuc
parents:
diff changeset
4 Detected format is
fe62ba547975 Uploaded
iuc
parents:
diff changeset
5 tag size is determined as 86 bps
fe62ba547975 Uploaded
iuc
parents:
diff changeset
6 # tag size = 86
fe62ba547975 Uploaded
iuc
parents:
diff changeset
7 # total tags in alignment file
fe62ba547975 Uploaded
iuc
parents:
diff changeset
8 # Build Peak Model...
3
6d4babad010f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316
iuc
parents: 0
diff changeset
9 #2 looking for paired plus/minus strand peaks...
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
10 #2 number of paired peaks
fe62ba547975 Uploaded
iuc
parents:
diff changeset
11 start model_add_line...
fe62ba547975 Uploaded
iuc
parents:
diff changeset
12 start X-correlation...
fe62ba547975 Uploaded
iuc
parents:
diff changeset
13 end of X-cor
fe62ba547975 Uploaded
iuc
parents:
diff changeset
14 # finished!
fe62ba547975 Uploaded
iuc
parents:
diff changeset
15 # predicted fragment length is 284 bps
fe62ba547975 Uploaded
iuc
parents:
diff changeset
16 # alternative fragment length(s) may be 284 bps
fe62ba547975 Uploaded
iuc
parents:
diff changeset
17 # Generate R script for model