Mercurial > repos > iuc > macs2

comparison dir2html.py @ 4:56e104999978 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 9df9b52baf62b70fbcfc3fbe965d7197d4e8738e
author iuc
date Mon, 06 Feb 2017 02:30:37 -0500
parents fe62ba547975
children
comparison
equal deleted inserted replaced
3:6d4babad010f 4:56e104999978
1 #!/usr/bin/env python 1 #!/usr/bin/env python
2
3 from __future__ import print_function
4
2 import os 5 import os
3 import sys 6 import sys
4 from xml.sax.saxutils import escape 7 from xml.sax.saxutils import escape
5 8
6 def make_table( directory ): 9
10 def make_table(directory):
7 ret = ['<table class="fileList">\n'] 11 ret = ['<table class="fileList">\n']
8 for file in os.listdir( directory ): 12 for filename in os.listdir(directory):
9 ret.append('<tr><td class="file"><a href="%s">%s</a></td></tr>\n' % ( file, escape(file).replace( 'MACS2_', '' ) )) 13 ret.append('<tr><td class="file"><a href="%s">%s</a></td></tr>\n' % (filename, escape(filename).replace('MACS2_', '')))
10 ret.append('</table>') 14 ret.append('</table>')
11 return ''.join(ret) 15 return ''.join(ret)
12 16
13 def make_html( directory, stderr ): 17
18 def make_html(directory, stderr):
14 return '\n'.join(['<html>' 19 return '\n'.join(['<html>'
15 '<head>', 20 '<head>',
16 ' <title>Additional output created by MACS2</title>', 21 ' <title>Additional output created by MACS2</title>',
17 ' <style type="text/css">', 22 ' <style type="text/css">',
18 ' table.fileList { text-align: left; }', 23 ' table.fileList { text-align: left; }',
20 ' td.file { padding-left: 4em; }', 25 ' td.file { padding-left: 4em; }',
21 ' </style>', 26 ' </style>',
22 '</head>', 27 '</head>',
23 '<body>', 28 '<body>',
24 '<h1>Additional Files:</h1>', 29 '<h1>Additional Files:</h1>',
25 make_table( directory ), 30 make_table(directory),
26 '<h3>Messages from MACS2:</h3>', 31 '<h3>Messages from MACS2:</h3>',
27 stderr.read().replace('\n', '<br>'), 32 stderr.read().replace('\n', '<br>'),
28 '</body>', 33 '</body>',
29 '</html>']) 34 '</html>'])
30 35
36
31 if __name__ == '__main__': 37 if __name__ == '__main__':
32 if len(sys.argv) == 3: 38 if len(sys.argv) == 3:
33 directory_path = sys.argv[1] 39 directory_path = sys.argv[1]
34 stderr = open( sys.argv[2] ) 40 stderr = open(sys.argv[2])
35 print make_html( directory_path, stderr ) 41 print(make_html(directory_path, stderr))
36 else: 42 else:
37 sys.exit( 'Two parameter expected: directory path and stderr path' ) 43 sys.exit('Two parameter expected: directory path and stderr path')
38