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comparison macs2_bdgdiff.xml @ 4:56e104999978 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 9df9b52baf62b70fbcfc3fbe965d7197d4e8738e
author iuc
date Mon, 06 Feb 2017 02:30:37 -0500
parents bfe57d6e0c4c
children beb902da6e5f
comparison
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3:6d4babad010f 4:56e104999978
31 <param name="minlen" type="integer" label="Minimum length of differential region" value="200"/> 31 <param name="minlen" type="integer" label="Minimum length of differential region" value="200"/>
32 <param name="depth1" type="integer" value="1" label="Sequence depth of condition 1 in million reads" help="default: 1 (--depth1)" /> 32 <param name="depth1" type="integer" value="1" label="Sequence depth of condition 1 in million reads" help="default: 1 (--depth1)" />
33 <param name="depth2" type="integer" value="1" label="Sequence depth of condition 2 in million reads" help="default: 1 (--depth2)" /> 33 <param name="depth2" type="integer" value="1" label="Sequence depth of condition 2 in million reads" help="default: 1 (--depth2)" />
34 <param name="maxgap" type="integer" value="100" label="Maximum gap to merge nearby differential regions" help="Consider a wider gap for broad marks. Maximum gap should be smaller than minimum length. Default: 100 (-g)." /> 34 <param name="maxgap" type="integer" value="100" label="Maximum gap to merge nearby differential regions" help="Consider a wider gap for broad marks. Maximum gap should be smaller than minimum length. Default: 100 (-g)." />
35 35
36 <param name="outputs" type="select" display="checkboxes" multiple="True" label="Outputs"> 36 <param name="outputs" type="select" display="checkboxes" multiple="True" optional="false" label="Outputs">
37 <option value="--ofile-cond1">Unique regions in condition 1</option> 37 <option value="--ofile-cond1">Unique regions in condition 1</option>
38 <option value="--ofile-cond2">Unique regions in condition 2</option> 38 <option value="--ofile-cond2">Unique regions in condition 2</option>
39 <option value="--ofile-both-conditions" selected="true">Common regions in both conditions</option> 39 <option value="--ofile-both-conditions" selected="true">Common regions in both conditions</option>
40 <validator type="no_options" message="Please select at least one output file." />
41 </param> 40 </param>
42 </inputs> 41 </inputs>
43 <outputs> 42 <outputs>
44 <data name="output_cond1" format="bed" from_work_dir="MACS2_cond1.bed" label="${tool.name} on ${on_string} (cond 1)"> 43 <data name="output_cond1" format="bed" from_work_dir="MACS2_cond1.bed" label="${tool.name} on ${on_string} (cond 1)">
45 <filter>'--ofile-cond1' in outputs</filter> 44 <filter>'--ofile-cond1' in outputs</filter>