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comparison macs2_bdgcmp.xml @ 9:acbd3fb47f90 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
author iuc
date Thu, 25 Jan 2018 02:11:52 -0500
parents beb902da6e5f
children 640d3af5d833
comparison
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8:e8a060164e11 9:acbd3fb47f90
4 <import>macs2_macros.xml</import> 4 <import>macs2_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <expand macro="version_command" /> 8 <expand macro="version_command" />
9 <command> 9 <command><![CDATA[
10 <![CDATA[ 10 @home_dir@
11 macs2 bdgcmp 11 macs2 bdgcmp
12 -t '${ infile_treatment }' 12 -t '${ infile_treatment }'
13 -c '${ infile_control }' 13 -c '${ infile_control }'
14 14
15 -m '${ bdgcmp_options.bdgcmp_options_selector }' 15 -m '${ bdgcmp_options.bdgcmp_options_selector }'
16 #if str($bdgcmp_options.bdgcmp_options_selector) in ['FE', 'logFE', 'logLR']: 16 #if str($bdgcmp_options.bdgcmp_options_selector) in ['FE', 'logFE', 'logLR']:
17 -p '${ bdgcmp_options.pseudocount }' 17 -p '${ bdgcmp_options.pseudocount }'
18 #end if 18 #end if
19 -o '${ outfile }' 19 -o '${ outfile }'
20 ]]> 20 ]]></command>
21 </command>
22 <inputs> 21 <inputs>
23 <param name="infile_treatment" type="data" format="bedgraph" label="Treatment bedGraph file" /> 22 <param name="infile_treatment" type="data" format="bedgraph" label="Treatment bedGraph file" />
24 <param name="infile_control" type="data" format="bedgraph" label="Control bedGraph file" /> 23 <param name="infile_control" type="data" format="bedgraph" label="Control bedGraph file" />
25 24
26 <conditional name="bdgcmp_options"> 25 <conditional name="bdgcmp_options">