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comparison macs2_randsample.xml @ 9:acbd3fb47f90 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
author iuc
date Thu, 25 Jan 2018 02:11:52 -0500
parents beb902da6e5f
children 424aefbd7777
comparison
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8:e8a060164e11 9:acbd3fb47f90
4 <import>macs2_macros.xml</import> 4 <import>macs2_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <expand macro="version_command" /> 8 <expand macro="version_command" />
9 <command> 9 <command><![CDATA[
10 <![CDATA[ 10 @home_dir@
11 macs2 randsample 11 macs2 randsample
12 -t '${ infile }' 12 -t '${ infile }'
13 -o '${ outfile }' 13 -o '${ outfile }'
14 --seed '${ seed }' 14 --seed '${ seed }'
15 15
20 #if $method_options.method_options_selector == 'percentage': 20 #if $method_options.method_options_selector == 'percentage':
21 --percentage '${ method_options.percentage }' 21 --percentage '${ method_options.percentage }'
22 #else: 22 #else:
23 --number '${ method_options.number }' 23 --number '${ method_options.number }'
24 #end if 24 #end if
25 ]]> 25 ]]></command>
26 </command>
27 <inputs> 26 <inputs>
28 <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" /> 27 <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" />
29 <expand macro="tag_size" /> 28 <expand macro="tag_size" />
30 <conditional name="method_options"> 29 <conditional name="method_options">
31 <param name="method_options_selector" type="select" label="Select action to be performed"> 30 <param name="method_options_selector" type="select" label="Select action to be performed">