--- a/macs2_bdgdiff.xml	Tue Mar 06 07:25:31 2018 -0500
+++ b/macs2_bdgdiff.xml	Thu Mar 22 09:43:37 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="macs2_bdgdiff" name="MACS2 bdgdiff" version="@VERSION_STRING@.0">
+<tool id="macs2_bdgdiff" name="MACS2 bdgdiff" version="@VERSION_STRING@.1" profile="17.09">
     <description>Differential peak detection based on paired four bedgraph files</description>
     <macros>
         <import>macs2_macros.xml</import>
@@ -23,7 +23,7 @@
             -o c1.bed c2.bed both.bed &&
 
             awk '!/^track name/' "c1.bed" > '${ output_cond1 }' &&
-            awk '!/^track name/' "c2.bed" > '${ output_cond1 }' &&
+            awk '!/^track name/' "c2.bed" > '${ output_cond2 }' &&
             awk '!/^track name/' "both.bed" > '${ output_both }'
     ]]></command>
     <inputs>
@@ -51,7 +51,6 @@
     </outputs>
     <tests>
         <test>
-
             <param name="t1" value="bdgdiff_t1.bdg" ftype="bedgraph"/>
             <param name="t2" value="bdgdiff_t2.bdg" ftype="bedgraph"/>
             <param name="c1" value="bdgdiff_c1.bdg" ftype="bedgraph"/>
@@ -61,11 +60,13 @@
             <param name="depth1" value="10"/>
             <param name="depth2" value="1"/>
             <param name="maxgap" value="100"/>
-            <output name="output_cond1">
+            <output name="output_cond1" ftype="bed" value="bdgdiff_output_c1.bed"/>
+            <output name="output_cond2">
                 <assert_contents>
                     <has_text text="c2.bed1" />
                 </assert_contents>
             </output>
+            <output name="output_both" ftype="bed" value="bdgdiff_output_both.bed"/>
         </test>
     </tests>
     <help>