Mercurial > repos > iuc > macs2

diff macs2_refinepeak.xml @ 18:640d3af5d833 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
author iuc
date Sat, 02 Apr 2022 21:37:38 +0000
parents 424aefbd7777
children 86e2413cf3f8
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--- a/macs2_refinepeak.xml	Thu Apr 25 17:49:05 2019 -0400
+++ b/macs2_refinepeak.xml	Sat Apr 02 21:37:38 2022 +0000
@@ -1,5 +1,6 @@
-<tool id="macs2_refinepeak" name="MACS2 refinepeak" version="@VERSION_STRING@.1">
+<tool id="macs2_refinepeak" name="MACS2 refinepeak" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
     <description>Refine peak summits and give scores measuring balance of forward- backward tags (Experimental)</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>
@@ -15,12 +16,14 @@
             --cutoff '${ cutoff }'
             --window-size '${ winsize }'
             --ofile '${ outfile }'
+            @buffer_size@
     ]]></command>
     <inputs>
         <param name="infile" type="data" format="bam,bed" label="Sequencing alignment file" />
         <param name="bed_infile" type="data" format="bed" label="Candidate peak file in BED format" />
         <param name="cutoff" type="float" label="Cutoff" value="5.0" help="default: 5.0 (--cutoff)"/>
         <param name="winsize" type="integer" value="200" label="Scan window size on both side of the summit" help="default: 200bp (--window-size)" />
+        <expand macro="buffer_size"/>
     </inputs>
 
     <outputs>