Mercurial > repos > iuc > macs2
diff test-data/callpeak_part.tabular @ 18:640d3af5d833 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
| author | iuc |
|---|---|
| date | Sat, 02 Apr 2022 21:37:38 +0000 |
| parents | c16dbe4e2db2 |
| children | 86e2413cf3f8 |
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--- a/test-data/callpeak_part.tabular Thu Apr 25 17:49:05 2019 -0400 +++ b/test-data/callpeak_part.tabular Sat Apr 02 21:37:38 2022 +0000 @@ -1,14 +1,16 @@ -# This file is generated by MACS version 2.1.1.20160309 -# Command line: callpeak -t /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmptu7iXI/files/000/dataset_8.dat --name ChIP_200K_bed -c /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmptu7iXI/files/000/dataset_9.dat --format BED --gsize 3300000000 --keep-dup 1 --qvalue 0.05 --mfold 5 50 --bw 300 +# This file is generated by MACS version 2.2.7.1 +# Command line: callpeak -t /tmp/tmpnaqc0336/files/3/f/0/dataset_3f02f858-205a-41bb-bfbc-712b99093ecb.dat --name ChIP_200K_bed -c /tmp/tmpnaqc0336/files/e/4/5/dataset_e45de785-43dc-44da-badd-fd49fc164b85.dat --format BED --gsize 3300000000 --keep-dup 1 --d-min 20 --buffer-size 100000 --bdg --qvalue 0.05 --mfold 5 50 --bw 300 # ARGUMENTS LIST: # name = ChIP_200K_bed # format = BED -# ChIP-seq file = ['/private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmptu7iXI/files/000/dataset_8.dat'] -# control file = ['/private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmptu7iXI/files/000/dataset_9.dat'] +# ChIP-seq file = ['/tmp/tmpnaqc0336/files/3/f/0/dataset_3f02f858-205a-41bb-bfbc-712b99093ecb.dat'] +# control file = ['/tmp/tmpnaqc0336/files/e/4/5/dataset_e45de785-43dc-44da-badd-fd49fc164b85.dat'] # effective genome size = 3.30e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 5.00e-02 +# The maximum gap between significant sites is assigned as the read length/tag size. +# The minimum length of peaks is assigned as the predicted fragment length "d". # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 1000 bps and 10000 bps # Broad region calling is off @@ -26,75 +28,973 @@ # d = 254 # alternative fragment length(s) may be 254 bps chr start end length abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) name -chr1 840082 840400 319 840240 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_1 -chr1 919420 919785 366 919550 5.00 12.44148 5.85158 8.70936 ChIP_200K_bed_peak_2 -chr1 937221 937483 263 937375 4.00 10.06728 4.87632 6.61759 ChIP_200K_bed_peak_3 -chr1 954743 954996 254 954814 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_4 -chr1 994763 995016 254 994906 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_5 -chr1 1057395 1057648 254 1057509 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_6 -chr1 1240580 1241004 425 1240777 3.00 7.77216 3.90105 4.60940 ChIP_200K_bed_peak_7 -chr1 1307393 1307735 343 1307601 5.00 12.44148 5.85158 8.70936 ChIP_200K_bed_peak_8 -chr1 1440351 1440633 283 1440462 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_9 -chr1 1555433 1555725 293 1555571 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_10 -chr1 1590668 1590946 279 1590840 4.00 10.06728 4.87632 6.61759 ChIP_200K_bed_peak_11 -chr1 1837669 1838104 436 1837886 6.00 14.88256 6.82684 10.84922 ChIP_200K_bed_peak_12 -chr1 1840366 1840828 463 1840547 5.00 13.74439 5.90922 9.80598 ChIP_200K_bed_peak_13 -chr1 1976400 1976653 254 1976469 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_14 -chr1 2071302 2071627 326 2071423 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_15 -chr1 2105717 2106140 424 2105919 4.00 7.70001 4.64644 4.60940 ChIP_200K_bed_peak_16 -chr1 2126522 2126861 340 2126648 4.00 10.06728 4.87632 6.61759 ChIP_200K_bed_peak_17 -chr1 2246521 2246954 434 2246712 5.00 9.59761 5.57573 6.23289 ChIP_200K_bed_peak_18 -chr1 2313158 2313560 403 2313353 5.00 13.74439 5.90922 9.80598 ChIP_200K_bed_peak_19 -chr1 2345828 2346242 415 2346028 7.00 17.38158 7.80211 13.02598 ChIP_200K_bed_peak_20 -chr1 2510055 2510308 254 2510213 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_21 -chr1 3341408 3341661 254 3341461 3.00 7.77216 3.90105 4.60940 ChIP_200K_bed_peak_22 -chr1 3369639 3369892 254 3369863 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_23 -chr1 3400441 3400769 329 3400610 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_24 -chr1 3407841 3408094 254 3407975 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_25 -chr1 3481748 3482245 498 3481863 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_26 -chr1 3535562 3535821 260 3535663 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_27 -chr1 3537757 3538010 254 3537960 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_28 -chr1 3593610 3593863 254 3593838 3.00 7.77216 3.90105 4.60940 ChIP_200K_bed_peak_29 -chr1 3640884 3641366 483 3641134 12.00 30.54970 12.67843 24.90331 ChIP_200K_bed_peak_30 -chr1 3702144 3702397 254 3702260 3.00 7.77216 3.90105 4.60940 ChIP_200K_bed_peak_31 -chr1 3773699 3774058 360 3773876 7.00 19.11990 7.87896 14.58582 ChIP_200K_bed_peak_32 -chr1 3827306 3827722 417 3827525 5.00 13.74439 5.90922 9.80598 ChIP_200K_bed_peak_33 -chr1 4712784 4713037 254 4712904 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_34 -chr1 4886187 4886440 254 4886326 3.00 7.77216 3.90105 4.60940 ChIP_200K_bed_peak_35 -chr1 5569919 5570198 280 5570056 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_36 -chr1 5574777 5575080 304 5574838 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_37 -chr1 5805838 5806091 254 5805965 2.00 6.22382 2.95461 3.18932 ChIP_200K_bed_peak_38 -chr1 5976146 5976399 254 5976235 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_39 -chr1 6094646 6094899 254 6094678 2.00 6.22382 2.95461 3.18932 ChIP_200K_bed_peak_40 -chr1 6112957 6113210 254 6113135 3.00 6.57684 3.80689 3.50364 ChIP_200K_bed_peak_41 -chr1 6265253 6265640 388 6265437 6.00 11.56197 6.50502 7.91704 ChIP_200K_bed_peak_42 -chr1 6305229 6305482 254 6305299 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_43 -chr1 6306874 6307127 254 6307013 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_44 -chr1 6403481 6403843 363 6403679 6.00 16.40316 6.89409 12.16639 ChIP_200K_bed_peak_45 -chr1 6464657 6465096 440 6464869 6.00 11.56197 6.50502 7.91704 ChIP_200K_bed_peak_46 -chr1 6483604 6483857 254 6483739 3.00 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_47 -chr1 6498110 6498494 385 6498258 6.00 14.88256 6.82684 10.84922 ChIP_200K_bed_peak_48 -chr1 6535513 6535838 326 6535591 5.00 13.74439 5.90922 9.80598 ChIP_200K_bed_peak_49 -chr1 6614468 6614882 415 6614708 4.00 10.06728 4.87632 6.61759 ChIP_200K_bed_peak_50 -chr1 6706586 6706931 346 6706743 5.00 13.74439 5.90922 9.80598 ChIP_200K_bed_peak_51 -chr1 6761833 6762203 371 6762039 7.00 14.98313 7.61377 10.92185 ChIP_200K_bed_peak_52 -chr1 6780092 6780471 380 6780329 6.00 16.40316 6.89409 12.16639 ChIP_200K_bed_peak_53 -chr1 6787475 6787900 426 6787704 7.00 19.11990 7.87896 14.58582 ChIP_200K_bed_peak_54 -chr1 6949953 6950377 425 6950153 5.00 10.64473 5.71033 7.17293 ChIP_200K_bed_peak_55 -chr1 7102753 7103077 325 7102915 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_56 -chr1 7278317 7278718 402 7278483 6.00 16.40316 6.89409 12.16639 ChIP_200K_bed_peak_57 -chr1 7868456 7868722 267 7868577 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_58 -chr1 7962797 7963068 272 7962862 3.00 7.77216 3.90105 4.60940 ChIP_200K_bed_peak_59 -chr1 8042368 8042722 355 8042491 6.00 14.88256 6.82684 10.84922 ChIP_200K_bed_peak_60 -chr1 8075039 8075466 428 8075252 6.00 12.78498 6.66205 9.02328 ChIP_200K_bed_peak_61 -chr1 8076577 8076851 275 8076739 4.00 8.57130 4.75861 5.28944 ChIP_200K_bed_peak_62 -chr1 8091217 8091506 290 8091352 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_63 -chr1 8374359 8374715 357 8374570 6.00 16.40316 6.89409 12.16639 ChIP_200K_bed_peak_64 -chr1 8408996 8409352 357 8409218 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_65 -chr1 8731417 8731750 334 8731570 4.00 10.06728 4.87632 6.61759 ChIP_200K_bed_peak_66 -chr1 8786590 8786948 359 8786756 7.00 12.59445 7.26312 8.86075 ChIP_200K_bed_peak_67 -chr1 8908916 8909169 254 8909002 2.00 5.57376 2.92579 2.70690 ChIP_200K_bed_peak_68 -chr1 8978204 8978524 321 8978356 5.00 13.74439 5.90922 9.80598 ChIP_200K_bed_peak_69 -chr1 9048092 9048380 289 9048260 4.00 8.57130 4.75861 5.28944 ChIP_200K_bed_peak_70 -chr1 9065105 9065592 488 9065349 5.00 13.74439 5.90922 9.80598 ChIP_200K_bed_peak_71 -chr1 9069997 9070429 433 9070211 4.00 11.15252 4.92435 7.51486 ChIP_200K_bed_peak_72 +chr1 840082 840400 319 840240 4 11.1525 4.92435 7.51486 ChIP_200K_bed_peak_1 +chr1 919420 919785 366 919550 5 12.4415 5.85158 8.70937 ChIP_200K_bed_peak_2 +chr1 937221 937483 263 937375 4 10.0673 4.87632 6.6176 ChIP_200K_bed_peak_3 +chr1 954743 954996 254 954814 3 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_4 +chr1 994763 995016 254 994906 3 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_5 +chr1 1057395 1057648 254 1057509 3 8.63977 3.93948 5.28944 ChIP_200K_bed_peak_6 +chr1 1240580 1241004 425 1240777 3 7.77216 3.90105 4.6094 ChIP_200K_bed_peak_7 +chr1 1307393 1307735 343 1307601 5 12.4415 5.85158 8.70937 ChIP_200K_bed_peak_8 +chr1 1440351 1440633 283 1440462 4 11.1525 4.92435 7.51486 ChIP_200K_bed_peak_9 +chr1 1555433 1555725 293 1555571 4 11.1525 4.92435 7.51486 ChIP_200K_bed_peak_10 +chr1 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