Mercurial > repos > iuc > macs2

diff macs2_bdgdiff.xml @ 9:acbd3fb47f90 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
author iuc
date Thu, 25 Jan 2018 02:11:52 -0500
parents beb902da6e5f
children 38769345062e
line wrap: on
line diff
--- a/macs2_bdgdiff.xml	Wed Dec 27 10:18:03 2017 -0500
+++ b/macs2_bdgdiff.xml	Thu Jan 25 02:11:52 2018 -0500
@@ -8,8 +8,8 @@
     </expand>
     <expand macro="stdio" />
     <expand macro="version_command" />
-    <command>
-        <![CDATA[
+    <command><![CDATA[
+        @home_dir@
         macs2 bdgdiff
             --t1 '${ t1 }'
             --t2 '${ t2 }'
@@ -25,9 +25,7 @@
             awk '!/^track name/' "c1.bed" > '${ output_cond1 }' &&
             awk '!/^track name/' "c2.bed" > '${ output_cond1 }' &&
             awk '!/^track name/' "both.bed" > '${ output_both }'
-
-        ]]>
-    </command>
+    ]]></command>
     <inputs>
         <param name="t1" type="data" format="bedgraph" label="BedGraph for Treatment experiment 1" />
         <param name="t2" type="data" format="bedgraph" label="BedGraph for Treatment experiment 2" />