Mercurial > repos > iuc > macs2
diff macs2_macros.xml @ 9:acbd3fb47f90 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
| author | iuc |
|---|---|
| date | Thu, 25 Jan 2018 02:11:52 -0500 |
| parents | e8a060164e11 |
| children | 640d3af5d833 |
line wrap: on
line diff
--- a/macs2_macros.xml Wed Dec 27 10:18:03 2017 -0500 +++ b/macs2_macros.xml Thu Jan 25 02:11:52 2018 -0500 @@ -9,23 +9,25 @@ </requirements> </xml> + <token name="@home_dir@"><![CDATA[ + export PYTHON_EGG_CACHE=`pwd` && + ]]></token> + <xml name="conditional_effective_genome_size"> <conditional name="effective_genome_size_options"> <param name="effective_genome_size_options_selector" type="select" label="Effective genome size" help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of Ns that should be discarded. - Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly. (--gsize)"> - <option value="2451960000">H. sapiens (2,451,960,000)</option> - <option value="2150570000">M. musculus (2,150,570,000)</option> - <option value="121400000">D. melanogaster (121,400,000)</option> - <option value="93260000">C. elegans (93,260,000)</option> - <option value="12400000">S. cerevisiae (12,400,000)</option> + Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly. Sizes are from the MACS2 website (--gsize)"> + <option value="2700000000">H. sapiens (2.7e9)</option> + <option value="1870000000">M. musculus (1.87e9)</option> + <option value="120000000">D. melanogaster (1.2e8)</option> + <option value="90000000">C. elegans (9e7)</option> <option value="user_defined">User defined</option> </param> - <when value="2451960000" /> - <when value="2150570000" /> - <when value="121400000" /> - <when value="93260000" /> - <when value="12400000" /> + <when value="2700000000" /> + <when value="1870000000" /> + <when value="120000000" /> + <when value="90000000" /> <when value="user_defined"> <param name="gsize" type="integer" label="Effective genome size" value=""/> </when>