Mercurial > repos > iuc > macs2

diff macs2_refinepeak.xml @ 9:acbd3fb47f90 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
author iuc
date Thu, 25 Jan 2018 02:11:52 -0500
parents beb902da6e5f
children 424aefbd7777
line wrap: on
line diff
--- a/macs2_refinepeak.xml	Wed Dec 27 10:18:03 2017 -0500
+++ b/macs2_refinepeak.xml	Thu Jan 25 02:11:52 2018 -0500
@@ -6,8 +6,8 @@
     <expand macro="requirements" />
     <expand macro="stdio" />
     <expand macro="version_command" />
-    <command>
-        <![CDATA[
+    <command><![CDATA[
+        @home_dir@
         macs2 refinepeak
             -b '${ bed_infile }'
             -i '${ infile }'
@@ -15,8 +15,7 @@
             --cutoff '${ cutoff }'
             --window-size '${ winsize }'
             --ofile '${ outfile }'
-        ]]>
-    </command>
+    ]]></command>
     <inputs>
         <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" />
         <param name="bed_infile" type="data" format="bed" label="Candidate peak file in BED format" />