Mercurial > repos > iuc > maf_stats

comparison maf_stats.xml @ 1:0c84cce7b030 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 95632be9aca24769ac192f2eb6a0454af21eff9e"
author iuc
date Tue, 10 Nov 2020 18:48:52 +0000
parents 5a92f4c476b5
children 87c1c223c704
comparison
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0:5a92f4c476b5 1:0c84cce7b030
1 <tool id="maf_stats1" name="MAF Coverage Stats" version="1.0.1"> 1 <tool id="maf_stats1" name="MAF Coverage Stats" version="1.0.1+galaxy0">
2 <description>Alignment coverage information</description> 2 <description>Alignment coverage information</description>
3 <command> 3 <command>
4 <![CDATA[ 4 <![CDATA[
5 #if $maf_source_type.maf_source == 'cached' 5 #if $maf_source_type.maf_source == 'cached'
6 #set $tab = '\t' 6 #set $tab = '\t'
46 <column name="name" index="0"/> 46 <column name="name" index="0"/>
47 <column name="value" index="1"/> 47 <column name="value" index="1"/>
48 <column name="indexed_for" index="2"/> 48 <column name="indexed_for" index="2"/>
49 <column name="exists_in_maf" index="3" /> 49 <column name="exists_in_maf" index="3" />
50 <column name="path" index="4" /> 50 <column name="path" index="4" />
51 <filter type="data_meta" ref="input1" key="dbkey" column="2" multiple="True" separator=","/>
52 <validator type="no_options" message="No alignments are available for the build associated with the selected interval file"/>
53 </options> 51 </options>
54 </param> 52 </param>
55 <param name="species" type="select" display="checkboxes" multiple="true" label="Choose species" help="Select species to be included in the final alignment"> 53 <param name="species" type="select" display="checkboxes" multiple="true" label="Choose species" help="Select species to be included in the final alignment">
56 <options from_data_table="maf_indexes"> 54 <options from_data_table="maf_indexes">
57 <column name="value" index="3"/> 55 <column name="value" index="3"/>