Mercurial > repos > iuc > maf_stats

comparison test-data/maf_stats-in1.bed @ 0:5a92f4c476b5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit f7b04f8c6edca90b1e9bc867a1569996aec76d7a"
author iuc
date Thu, 13 Aug 2020 09:30:47 -0400
parents
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comparison
equal deleted inserted replaced
-1:000000000000 0:5a92f4c476b5
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162 chr22 17207205 17221854 ENST00000441548.1 0 - 17207205 17209677 0 3 85,368,128, 0,2150,14521,
163 chr22 17209605 17258235 ENST00000649310.1 0 - 17209605 17209677 0 2 118,68, 0,48562,
164 chr22 17209605 17258235 ENST00000649746.1 0 - 17209605 17209677 0 4 118,375,611,72, 0,12121,46662,48558,
165 chr22 17213515 17214155 ENST00000344033.5 0 + 17213515 17213515 0 2 241,92, 0,548,
166 chr22 17256858 17266733 ENST00000428828.1 0 - 17256858 17256858 0 3 1448,256,211, 0,3931,9664,
167 chr22 17329033 17329232 ENST00000453421.1 0 + 17329033 17329033 0 1 199, 0,
168 chr22 17352880 17353177 ENST00000485262.3 0 - 17352880 17352880 0 1 297, 0,
169 chr22 17359948 17553332 ENST00000400585.6 0 + 17499493 17552840 0 19 75,95,184,140,105,50,170,84,154,130,38,92,127,389,129,847,1414,112,498, 0,117639,137454,139461,140682,143133,144898,151864,164169,177154,178571,178691,179044,180463,181890,182208,188202,192082,192886,
170 chr22 17369365 17554145 ENST00000342247.9 0 + 17369783 17552840 0 20 544,95,184,140,105,50,170,84,210,4,130,38,92,127,389,129,847,1417,112,1311, 0,108222,128037,130044,131265,133716,135481,142447,154752,165378,167737,169154,169274,169627,171046,172473,172791,178782,182665,183469,
171 chr22 17369887 17553332 ENST00000262608.12 0 + 17499493 17552840 0 19 22,95,184,140,105,50,170,84,154,130,38,92,127,389,129,847,1417,112,498, 0,107700,127515,129522,130743,133194,134959,141925,154230,167215,168632,168752,169105,170524,171951,172269,178260,182143,182947,
172 chr22 17418696 17419828 ENST00000455617.1 0 + 17418696 17418696 0 1 1132, 0,
173 chr22 17424387 17424775 ENST00000455251.1 0 - 17424387 17424387 0 1 388, 0,
174 chr22 17428272 17499458 ENST00000497534.1 0 + 17428272 17428272 0 4 268,95,184,49, 0,49315,69130,71137,
175 chr22 17477092 17558149 ENST00000612582.1 0 + 17477099 17552840 0 19 67,95,184,140,105,50,170,84,154,130,38,92,127,389,129,847,1417,112,5315, 0,495,20310,22317,23538,25989,27754,34720,47025,60010,61427,61547,61900,63319,64746,65064,71055,74938,75742,
176 chr22 17518675 17519029 ENST00000437347.1 0 - 17518675 17518675 0 1 354, 0,
177 chr22 17521513 17570078 ENST00000651475.1 0 - 17521513 17521513 0 6 1014,118,34,108,125,101, 0,5819,8344,21367,24413,48464,
178 chr22 17548998 17554133 ENST00000355219.3 0 + 17548998 17550333 0 4 566,167,112,1299, 0,1244,3032,3836,
179 chr22 17563449 17590881 ENST00000399813.1 0 + 17579944 17590236 0 10 264,220,123,56,91,119,166,155,76,787, 0,16295,17587,17908,19113,19966,23686,24475,26140,26645,
180 chr22 17563463 17570256 ENST00000496051.1 0 + 17563463 17563463 0 2 250,333, 0,6460,
181 chr22 17563497 17590995 ENST00000327451.11 0 + 17579944 17590236 0 11 216,63,220,123,56,91,119,166,155,76,901, 0,6426,16247,17539,17860,19065,19918,23638,24427,26092,26597,
182 chr22 17563588 17582208 ENST00000467228.1 0 + 17563588 17563588 0 4 125,63,1415,851, 0,6335,16156,17769,
183 chr22 17569700 17583484 ENST00000497401.1 0 + 17569700 17569700 0 6 286,220,123,56,91,69, 0,10044,11336,11657,12862,13715,
184 chr22 17569706 17570393 ENST00000469889.1 0 + 17569706 17569706 0 2 90,470, 0,217,
185 chr22 17580156 17589192 ENST00000443935.5 0 - 17580156 17580156 0 4 175,215,122,1326, 0,1177,2094,7710,
186 chr22 17580313 17588018 ENST00000611039.1 0 - 17580313 17580313 0 4 18,215,122,152, 0,1020,4951,7553,
187 chr22 17592135 17628749 ENST00000253413.10 0 - 17592673 17628635 0 9 601,88,95,69,90,67,110,66,147, 0,2393,6058,7891,8956,20676,21075,27325,36467,
188 chr22 17592168 17628747 ENST00000399796.6 0 - 17592673 17628635 0 8 568,88,95,69,67,110,66,145, 0,2360,6025,7858,20643,21042,27292,36434,
189 chr22 17592408 17628749 ENST00000399798.6 0 - 17592673 17628635 0 8 328,88,95,69,90,67,110,147, 0,2120,5785,7618,8683,20403,20802,36194,
190 chr22 17592668 17595292 ENST00000473248.1 0 - 17592668 17592668 0 2 68,764, 0,1860,
191 chr22 17594538 17628733 ENST00000413576.1 0 - 17594538 17619468 0 9 78,95,69,90,67,110,94,66,131, 0,3655,5488,6553,18273,18672,24495,24922,34064,
192 chr22 17598000 17619528 ENST00000481365.5 0 - 17598000 17598000 0 6 288,69,90,67,110,68, 0,2026,3091,14811,15210,21460,
193 chr22 17600679 17619528 ENST00000484653.5 0 - 17600679 17600679 0 4 502,67,110,68, 0,12132,12531,18781,
194 chr22 17612613 17628748 ENST00000478963.5 0 - 17612613 17612613 0 4 265,110,66,146, 0,597,6847,15989,
195 chr22 17612975 17628749 ENST00000460085.1 0 - 17612975 17612975 0 3 345,66,147, 0,6485,15627,
196 chr22 17628854 17696209 ENST00000399781.5 0 + 17628854 17628854 0 5 52,599,171,108,69, 0,9247,26807,54359,67286,
197 chr22 17628915 17702428 ENST00000399782.5 0 + 17655711 17702392 0 7 90,599,171,108,157,70,186, 0,9186,26746,54298,60070,67225,73327,
198 chr22 17638583 17730855 ENST00000337612.9 0 + 17655711 17726690 0 5 303,171,108,144,4179, 0,17078,44630,63659,88093,
199 chr22 17638583 17730855 ENST00000418951.6 0 + 17702272 17727534 0 6 303,171,108,157,144,4179, 0,17078,44630,50402,63659,88093,
200 chr22 17638583 17730855 ENST00000538149.5 0 + 17655711 17726690 0 4 303,171,144,4179, 0,17078,63659,88093,
201 chr22 17638583 17730855 ENST00000543133.5 0 + 17702272 17727534 0 6 303,171,108,70,144,4179, 0,17078,44630,57557,63659,88093,
202 chr22 17638583 17730855 ENST00000611738.4 0 + 17638693 17727534 0 5 303,108,157,70,4179, 0,44630,50402,57557,88093,
203 chr22 17638583 17730855 ENST00000616863.4 0 + 17655711 17726690 0 4 303,171,108,4179, 0,17078,44630,88093,
204 chr22 17638583 17730855 ENST00000618481.4 0 + 17638693 17727534 0 6 303,108,157,70,144,4179, 0,44630,50402,57557,63659,88093,
205 chr22 17638740 17728699 ENST00000498133.5 0 + 17655711 17696148 0 6 146,171,108,70,144,2023, 0,16921,44473,57400,63502,87936,
206 chr22 17638756 17692395 ENST00000464649.1 0 + 17638756 17638756 0 4 130,108,157,40, 0,44457,50229,53599,
207 chr22 17638756 17730855 ENST00000317582.10 0 + 17655711 17727534 0 7 130,171,108,157,70,144,4179, 0,16905,44457,50229,57384,63486,87920,
208 chr22 17638771 17703733 ENST00000493680.5 0 + 17655711 17702392 0 6 115,171,108,157,70,1491, 0,16890,44442,50214,57369,63471,
209 chr22 17638810 17730622 ENST00000355028.4 0 + 17655711 17726806 0 5 76,171,108,157,3946, 0,16851,44403,50175,87866,
210 chr22 17689073 17729140 ENST00000399777.1 0 + 17689073 17702288 0 3 69,144,2464, 0,13169,37603,
211 chr22 17695737 17702363 ENST00000479296.1 0 + 17695737 17695737 0 2 473,121, 0,6505,
212 chr22 17706709 17727670 ENST00000485631.1 0 + 17706709 17706709 0 2 116,994, 0,19967,
213 chr22 17734137 17774016 ENST00000317361.11 0 - 17735579 17773689 0 6 1454,213,140,211,70,407, 0,3879,5211,9665,15967,39472,
214 chr22 17734141 17774042 ENST00000615414.4 0 - 17735579 17739423 0 4 1450,213,140,433, 0,3875,5207,39468,
215 chr22 17734141 17774495 ENST00000399767.5 0 - 17735579 17739423 0 5 1450,213,140,211,115, 0,3875,5207,9661,40239,
216 chr22 17734141 17774495 ENST00000614949.4 0 - 17735579 17739423 0 5 1450,213,140,70,115, 0,3875,5207,15963,40239,
217 chr22 17734141 17774495 ENST00000622694.4 0 - 17735579 17750116 0 6 1450,213,140,211,70,115, 0,3875,5207,9661,15963,40239,
218 chr22 17734170 17774492 ENST00000399774.7 0 - 17735579 17750116 0 6 1421,213,140,211,70,112, 0,3846,5178,9632,15934,40210,
219 chr22 17734174 17774489 ENST00000399765.5 0 - 17735579 17739423 0 4 1417,213,140,109, 0,3842,5174,40206,
220 chr22 17735221 17741194 ENST00000494097.5 0 - 17735221 17735221 0 3 370,213,1846, 0,2795,4127,
221 chr22 17735498 17774412 ENST00000342111.9 0 - 17739392 17750116 0 7 93,213,140,95,211,70,32, 0,2518,3850,4583,8304,14606,38882,
222 chr22 17735551 17774412 ENST00000550946.5 0 - 17735551 17735551 0 6 40,213,828,211,70,32, 0,2465,3797,8251,14553,38829,
223 chr22 17735551 17774665 ENST00000551952.5 0 - 17735579 17750116 0 6 40,213,140,211,70,26, 0,2465,3797,8251,14553,39088,
224 chr22 17735551 17774665 ENST00000611040.1 0 - 17735579 17739423 0 4 40,213,140,26, 0,2465,3797,39088,
225 chr22 17738057 17774495 ENST00000473439.5 0 - 17738057 17738057 0 4 172,140,211,115, 0,1291,5745,36323,
226 chr22 17739447 17774770 ENST00000552886.1 0 - 17739447 17739447 0 3 41,211,78, 0,4355,35245,
227 chr22 17740030 17774495 ENST00000617586.1 0 - 17740030 17750116 0 4 146,211,70,115, 0,3772,10074,34350,
228 chr22 17764179 17764259 ENST00000583102.1 0 - 17764179 17764179 0 1 80, 0,
229 chr22 17777321 17779481 ENST00000600723.1 0 + 17777321 17777321 0 1 2160, 0,
230 chr22 17787648 18024561 ENST00000441493.7 0 - 17790731 17906812 0 32 3268,74,100,94,111,95,1819,83,141,114,138,254,196,88,89,187,174,63,113,197,148,97,127,116,258,101,156,102,117,208,338,281, 0,3349,3553,21195,23054,29041,29662,33778,34381,35298,39995,44205,54173,77250,78275,84188,98229,99521,99674,101385,103836,106159,107635,108597,109075,111799,113193,114229,114982,116983,118900,236632,
231 chr22 17787648 18024561 ENST00000672019.1 0 - 17830068 17906812 0 33 3268,74,100,94,111,95,1819,83,141,114,138,88,254,196,88,89,187,174,63,113,197,148,97,127,116,258,101,156,102,117,208,338,281, 0,3349,3553,21195,23054,29041,29662,33778,34381,35298,39995,42418,44205,54173,77250,78275,84188,98229,99521,99674,101385,103836,106159,107635,108597,109075,111799,113193,114229,114982,116983,118900,236632,
232 chr22 17787651 17811497 ENST00000476405.1 0 - 17787651 17787651 0 5 3265,74,100,94,795, 0,3346,3550,21192,23051,
233 chr22 17790539 17791667 ENST00000252134.11 0 - 17790539 17790539 0 3 377,74,466, 0,458,662,
234 chr22 17790836 17815669 ENST00000580469.1 0 - 17790836 17790836 0 6 80,74,100,94,111,3163, 0,161,365,18007,19866,21670,
235 chr22 17790945 17817489 ENST00000577821.5 0 - 17790945 17817489 0 8 126,100,51,94,111,51,95,179, 0,256,12865,17898,19757,21561,25744,26365,
236 chr22 17791263 17817425 ENST00000579997.5 0 - 17791263 17817425 0 6 38,66,94,111,95,115, 0,2465,17580,19439,25426,26047,
237 chr22 17800721 17802035 ENST00000657505.1 0 + 17800721 17800721 0 2 415,576, 0,738,
238 chr22 17803553 17810736 ENST00000584751.1 0 - 17803571 17810736 0 3 308,94,34, 0,5290,7149,
239 chr22 17819021 17832000 ENST00000498573.5 0 - 17819021 17832000 0 5 108,83,141,114,147, 0,2405,3008,3925,12832,
240 chr22 17819035 17831927 ENST00000578984.1 0 - 17819035 17831927 0 6 94,83,141,114,63,74, 0,2391,2994,3911,7418,12818,
241 chr22 17834327 17906835 ENST00000400561.6 0 - 17834449 17906812 0 20 222,196,88,89,187,174,63,113,197,148,97,127,116,258,101,156,102,117,208,287, 0,7494,30571,31596,37509,51550,52842,52995,54706,57157,59480,60956,61918,62396,65120,66514,67550,68303,70304,72221,
242 chr22 17839591 18001501 ENST00000495076.5 0 - 17896820 17906812 0 19 2426,88,89,187,174,63,113,197,148,97,127,116,258,156,102,117,208,338,109, 0,25307,26332,32245,46286,47578,47731,49442,51893,54216,55692,56654,57132,61250,62286,63039,65040,66957,161801,
243 chr22 17839950 17842482 ENST00000578905.1 0 - 17839950 17839950 0 1 2532, 0,
244 chr22 17839950 17906812 ENST00000414725.6 0 - 17841775 17906812 0 20 2067,88,89,187,84,174,63,113,197,148,97,127,116,258,101,156,102,117,208,264, 0,24948,25973,31886,44324,45927,47219,47372,49083,51534,53857,55333,56295,56773,59497,60891,61927,62680,64681,66598,
245 chr22 17841674 17906827 ENST00000383094.7 0 - 17841775 17906812 0 19 343,88,89,187,174,63,113,197,148,97,127,116,258,101,156,102,117,208,279, 0,23224,24249,30162,44203,45495,45648,47359,49810,52133,53609,54571,55049,57773,59167,60203,60956,62957,64874,
246 chr22 17860162 17895288 ENST00000461307.5 0 - 17864653 17895288 0 11 4824,89,187,84,174,63,113,197,148,97,5, 0,5761,11674,24112,25715,27007,27160,28871,31322,33645,35121,
247 chr22 17864614 17906874 ENST00000585038.1 0 - 17864653 17906812 0 22 372,89,187,108,108,57,99,174,63,113,197,148,97,127,116,258,101,156,102,117,208,326, 0,1309,7222,8132,10832,14731,16590,21263,22555,22708,24419,26870,29193,30669,31631,32109,34833,36227,37263,38016,40017,41934,
248 chr22 17865923 17876703 ENST00000462645.1 0 - 17865923 17865923 0 3 89,187,296, 0,5913,10484,
249 chr22 17871929 17876872 ENST00000465886.1 0 - 17871929 17871929 0 2 94,465, 0,4478,
250 chr22 17871933 17876739 ENST00000498345.1 0 - 17871933 17871933 0 3 90,116,332, 0,3277,4474,