Mercurial > repos > iuc > mageck_gsea

comparison mageck_macros.xml @ 2:82a180e6b582 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
author iuc
date Wed, 04 Apr 2018 11:03:05 -0400
parents d95eae71878e
children 3b22ff50a362
comparison
equal deleted inserted replaced
1:80cf607159ae 2:82a180e6b582
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3
3 <token name="@VERSION@">0.5.7</token> 4 <token name="@VERSION@">0.5.7</token>
5
4 <xml name="requirements"> 6 <xml name="requirements">
5 <requirements> 7 <requirements>
6 <requirement type="package" version="@VERSION@">mageck</requirement> 8 <requirement type="package" version="@VERSION@">mageck</requirement>
7 <!-- needed for pdf report outputs --> 9 <requirement type="package" version="1.14.2">numpy</requirement>
8 <requirement type="package" version="3.0.1">r-gplots</requirement> 10 <requirement type="package" version="3.0.1">r-gplots</requirement>
9 <requirement type="package" version="1.8_2">r-xtable</requirement> 11 <requirement type="package" version="1.8_2">r-xtable</requirement>
10 <yield/> 12 <yield/>
11 </requirements> 13 </requirements>
12 </xml> 14 </xml>
15
13 <xml name="version"> 16 <xml name="version">
14 <version_command>mageck -v </version_command> 17 <version_command><![CDATA[
18 echo $(mageck -v )", numpy version" $([python -c "import numpy; numpy.version.version"])", gplots version" $(R --vanilla --slave -e "library(gplots); cat(sessionInfo()\$otherPkgs\$gplots\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", xtable version" $(R --vanilla --slave -e "library(xtable); cat(sessionInfo()\$otherPkgs\$xtable\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
19 ]]></version_command>
15 </xml> 20 </xml>
21
22 <xml name="sort_criteria">
23 <param name="sort_criteria" argument="--sort-criteria" type="select" optional="true" label="Sorting criteria">
24 <option value="neg" selected="True">Negative selection</option>
25 <option value="pos">positive selection</option>
26 </param>
27 </xml>
28
16 <xml name="citations"> 29 <xml name="citations">
17 <citations> 30 <citations>
18 <citation type="doi">10.1186/s13059-014-0554-4</citation> 31 <citation type="doi">10.1186/s13059-014-0554-4</citation>
19 </citations> 32 </citations>
20 </xml> 33 </xml>
21 <xml name="sort_criteria">
22 <param name="sort_criteria" argument="--sort-criteria" type="select" label="Sorting criteria">
23 <option value="neg" selected="True">Negative selection</option>
24 <option value="pos">positive selection</option>
25 </param>
26 </xml>
27 </macros> 34 </macros>