--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/in.mle.sgrnaeff	Mon Jun 04 10:58:04 2018 -0400
@@ -0,0 +1,100 @@
+CATGGCCATGGGCACCCGCC	INO80B_m74682554	INO80B	-0.005239
+AGGAGCTGCACCGCCACGCC	NHS_p17705966	NHS	-0.018779
+AACCACCAGCTGGTCCCGCC	MED14_m40594623	MED14	-0.018132
+CAGCAACAGCCACCGCCATT	MX2_p42748920	MX2	-0.012714
+CAGGCCTCACCTGCACCGCC	SH3GLB2_p131790360	SH3GLB2	-0.072219
+ATGATTCTTCACCTGCCGCT	RECQL_m21644465	RECQL	-0.106925
+CTGCACCAGCCATATCGCGC	CCDC170_p151815274	CCDC170	-0.015925
+ACGTCTCCGCCAGCCACTCC	MEIS2_p37388538	MEIS2	-0.061877
+AAGGTGGCATGGACCCGCCA	NTRK2_p87285677	NTRK2	0.062009
+GCTTCAAAGCACCCGCCGCC	AIFM1_p129299590	AIFM1	-0.116716
+AGGACGAGGGCCGCCGTGAC	PIN1_m9949250	PIN1	0.084799
+GGATTTCAGAACCGCCTGTG	SNTG1_p51306800	SNTG1	-0.002402
+CGCTGCCGTTCCCGCCGCTC	PHLPP1_m60383095	PHLPP1	-0.065516
+TCTTCATCACGCCGCCCGCC	DIS3_p73355915	DIS3	-0.178900
+TAATCCTTGCCCGCCATGTC	APLF_p68694848	APLF	-0.125824
+CGAGGAAGGCGAGAACCGCC	HNRPLL_m38829641	HNRPLL	0.208905
+TAATGATAAGCAGACCCGCC	SCRN1_m29994913	SCRN1	-0.042915
+GGAGCCGCCGCCGCCATATC	RNF11_p51702529	RNF11	-0.022538
+AAGAGCGCACCTGCCACTGG	HIST3H3_m228612925	HIST3H3	0.041563
+ACAGATGTCCAGCAACCGCC	SETD1B_p122243019	SETD1B	-0.022566
+GAACAAAGAACCGCCGGCGC	TMEM165_p56262481	TMEM165	-0.068287
+GGAACAGAAGCTGTCCCGCC	MAP2K7_p7968846	MAP2K7	-0.001348
+ACGTTCCCGCCGCCGCCGTT	TAF5_m105127878	TAF5	-0.075037
+TTATGCCCTGAACACCCGCC	FAM184B_m17711242	FAM184B	-0.060696
+TCTCCTCCACCCGCCGGGTC	ZW10_p113644288	ZW10	-0.132037
+AAAGTTGCAGCCGCCACTGC	SNAPC3_m15422944	SNAPC3	-0.064822
+GAGCTGAGCCTGCCACGCCG	MAST3_p18218399	MAST3	0.097420
+TAGTCTTGTCCCTACCCGCC	DDX31_m135545488	DDX31	-0.182423
+GACGGCGTGCAGCTCCCGCC	EIF4EBP1_p37888163	EIF4EBP1	0.027745
+CAGGACTACCGCCATATCCC	ZNF35_m44694064	ZNF35	-0.065333
+CGGCCGCTACCGCCGCTACC	DSTYK_m205180551	DSTYK	-0.121018
+GACCTTTGGAGTTCATCAAA	TCF12_p57524508	TCF12	0.075702
+TGGGAAGGCGTCCGACCGCC	C21orf33_m45553648	C21orf33	-0.011841
+CCGGGACCGCCACTGCCGAG	SYN1_m47478971	SYN1	0.168301
+CTCGGACGAGCGGCTGGGCC	TXNRD3_p126373683	TXNRD3	-0.003583
+TCTCATTGACCGGACCCGCC	SNRNP200_m96970554	SNRNP200	-0.101923
+GGAGCGCACCCGCCGCGGAA	C9orf69_p139008710	C9orf69	0.127616
+TCGCTTCCGCCGCCACTGCC	NPAS1_m47524322	NPAS1	-0.003985
+GGATGCGACCGCCACTATCG	SMARCA1_m128657283	SMARCA1	0.063867
+CCCAAATGCGCCCGCCTGCA	WDR77_m111991712	WDR77	0.023250
+CTCACGAGCCGAGCCTCTCG	PNCK_p152938458	PNCK	0.124364
+CAACGAAGACGCTCCCGCCT	SENP3_m7466474	SENP3	0.024559
+GCCGCCGAAACCGCCACGGA	RFWD2_p176175980	RFWD2	0.003107
+GCTCACCTTCACCGCCGCTC	C9orf9_p135759399	C9orf9	-0.134392
+TGAAACCCTGGCCCGCCAGT	C4orf22_p81283909	C4orf22	-0.016684
+GGGCTGCTCCTGCTTCCTCC	ZNF827_p146859532	ZNF827	-0.094275
+GTGGTGCCACCCGCCGTGGC	EPM2A_m146056593	EPM2A	-0.112144
+GTGTATCCAGTGCCTGCTCT	TMEM175_m941547	TMEM175	-0.249848
+GCAGCGCCAGTCCCGCCAGC	DUSP23_m159750934	DUSP23	-0.134388
+AGTGGCTGCTCCCGCCATAC	YLPM1_m75230212	YLPM1	-0.007259
+AGCACCACCAGCTGTTGCTC	RAB1A_p65315689	RAB1A	-0.032893
+AGTGGTTCCCGCCGCAGGAC	GSG2_p3627326	GSG2	0.033727
+CAGAACCCGCCACTTGTCCA	RPL10L_p47120303	RPL10L	0.026564
+GACCATGAACCGCAGCCGCC	PWP1_p108079672	PWP1	-0.090761
+AAGGAGGATAGAGGCCCGCC	KIAA1755_p36874470	KIAA1755	0.005710
+TCTCCAATACCTGCCGATTC	JAZF1_m28220148	JAZF1	-0.153656
+CGTTCACCCGCCGGGCCTTT	PAXBP1_p34143951	PAXBP1	-0.074149
+GGTAGCCAGGGCACCCGCCA	BMPR2_m203242221	BMPR2	0.152337
+GCCTCCACCGCCCGCCGCTT	UXT_p47518291	UXT	-0.042766
+ACTCTCACCGCCGTAGGTGC	POU2AF1_p111229504	POU2AF1	-0.026811
+CTGGACGACCGCCACGACAG	NFKBIA_m35873755	NFKBIA	0.076979
+CTGAATCCCGCCACACTCTC	LPIN1_p11905730	LPIN1	-0.025123
+TACCGGAGCCGCGACCGCCT	ZNF746_p149194600	ZNF746	0.173225
+TTTATCTGCATTTCCATGAC	SYNPO2_p119810206	SYNPO2	-0.140214
+TCACTCCTGAACAGACTTCT	LTA4H_m96421257	LTA4H	-0.030193
+GATGGTCGCCGCCTGCCGCT	TMEM87B_p112813167	TMEM87B	0.036418
+CTGGATGGAGCCGCCGCTCC	OCRL_p128674412	OCRL	-0.150457
+AGTGGACATCCGCCATAACA	RPL18_m49121112	RPL18	0.056941
+GACAAGGCGAAACCGCCGCC	PSMD3_p38137259	PSMD3	0.030238
+AGCCACACCGAGAACCGCCG	WBP2NL_p42394837	WBP2NL	0.131323
+CGGCCTCCAGCCGCCACTTG	LUZP1_m23420706	LUZP1	-0.002771
+ATTCTCTTTGGAGCCGTGAG	STRADB_p202340406	STRADB	-0.001874
+GCCTCTTCTCCGCGCTCTCG	FOXL2_p138665341	FOXL2	-0.150694
+CTGCACCCAACCGCCGGCAC	ADRA1A_m26722428	ADRA1A	-0.096324
+TCACCCAGCCATACCAGCCG	RBBP9_p18477729	RBBP9	0.064510
+AGTCCTCCCGCCGCTGCAGC	IMP3_p75932376	IMP3	-0.091312
+TGGTGTCTCATCTCCTTGCC	RABGAP1_m125719426	RABGAP1	-0.201102
+TTTAGGAGCTTCTCCAAATT	RARS_p167915662	RARS	-0.079412
+ACAGGCCCGCCACGTCCGTC	RPRM_p154335036	RPRM	0.003556
+GGACATGAAGGAGTCCCGCC	OBFC1_m105677228	OBFC1	0.039483
+GAGCTGCGGGACCCGCCACC	TINF2_p24711504	TINF2	-0.010376
+TTCTTCCAGAGAGAACTCTA	ZNF565_p36686010	ZNF565	0.131393
+CACATTCTCCACCCGCCGAG	CCDC78_p776304	CCDC78	0.076491
+TAGGCGCCCGCCGCTCTTCC	YWHAB_p43530334	YWHAB	-0.008675
+CGCTCCCGCCGCTGCTTCCT	CRX_m48339507	CRX	-0.050130
+AGCGGCACCTACACCCGCCA	EXOSC1_m99205546	EXOSC1	0.090355
+CGCGGTGGGCAAGACGAGCC	RHOU_p228871662	RHOU	0.144042
+TTCTCAAGAAATTCACCGCC	CHMP1B_m11851692	CHMP1B	-0.112913
+CACCGCCACCGCCACGACCA	U2AF1_p44513288	U2AF1	0.080210
+TCCCAACACCCGCCAAGAGA	NET1_p5494387	NET1	0.089082
+TCTGAGCTCCAGGTGCTTCT	PIAS3_p145578085	PIAS3	-0.027557
+TTCGCCCGCCGGCTCCTGCG	CMPK2_m7005801	CMPK2	0.105524
+ACCAGCCAAGATTGCCCGCC	SATB1_m18462362	SATB1	-0.070132
+GACACACCTCGCCCGCCTCC	FOXA3_m46367770	FOXA3	-0.054864
+AAATTCCCAGGAGAAATATA	ZNF627_p11725680	ZNF627	0.090453
+GTCACGGCCGCCCGCCGACA	MLLT4_m168227813	MLLT4	0.040685
+AACTGCCTGCACCGCCTCTA	FAM120A_p96214350	FAM120A	0.010379
+TTATGAAAGTATTTCTCTCC	ADNP2_m77891006	ADNP2	-0.159761
+CGCACCCTCACCGCCGGCCT	CD3EAP_m45909967	CD3EAP	-0.028605
+GTGGACCCTCGTGAGCGACC	HSF1_p145515504	HSF1	-0.051256