Mercurial > repos > iuc > mageck_pathway
comparison test-data/out.test.log.txt @ 2:ff3716b505d3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
| author | iuc |
|---|---|
| date | Wed, 04 Apr 2018 11:02:50 -0400 |
| parents | c871e57e2abb |
| children |
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| 1:37127c23a210 | 2:ff3716b505d3 |
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| 1 INFO @ Mon, 12 Feb 2018 03:40:01: Parameters: /home/maria/miniconda3/envs/mulled-v1-b1e6893952d2d7e4d51a13d040adcd7bea052bfdc57a24d59056014db875e749/bin/mageck test -k /tmp/tmp0xS0Jl/files/000/dataset_21.dat -t HL60.final,KBM7.final -c HL60.initial,KBM7.initial -n output --normcounts-to-file --pdf-report --norm-method median --gene-test-fdr-threshold 0.25 --adjust-method fdr --sort-criteria neg --remove-zero none --gene-lfc-method median | 1 INFO @ Mon, 26 Mar 2018 08:37:53: Parameters: /Users/doylemaria/miniconda3/envs/mulled-v1-9ee130591ca78526e74a59d8d6dc03cb7db20645470975762936caeac62972dc/bin/mageck test -k /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpTX65kA/files/000/dataset_4.dat -t HL60_final,KBM7_final -c HL60_initial,KBM7_initial -n output --normcounts-to-file --pdf-report --norm-method median --adjust-method fdr --sort-criteria neg --remove-zero both --gene-lfc-method median |
| 2 INFO @ Mon, 12 Feb 2018 03:40:01: Welcome to MAGeCK v0.5.7. Command: test | 2 INFO @ Mon, 26 Mar 2018 08:37:53: Welcome to MAGeCK v0.5.7. Command: test |
| 3 INFO @ Mon, 12 Feb 2018 03:40:01: Loading count table from /tmp/tmp0xS0Jl/files/000/dataset_21.dat | 3 INFO @ Mon, 26 Mar 2018 08:37:53: Loading count table from /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpTX65kA/files/000/dataset_4.dat |
| 4 INFO @ Mon, 12 Feb 2018 03:40:01: Processing 1 lines.. | 4 INFO @ Mon, 26 Mar 2018 08:37:53: Processing 1 lines.. |
| 5 DEBUG @ Mon, 12 Feb 2018 03:40:01: Parsing error in line 1 (usually the header line). Skip this line. | 5 DEBUG @ Mon, 26 Mar 2018 08:37:53: Parsing error in line 1 (usually the header line). Skip this line. |
| 6 INFO @ Mon, 12 Feb 2018 03:40:01: Loaded 999 records. | 6 INFO @ Mon, 26 Mar 2018 08:37:53: Loaded 999 records. |
| 7 INFO @ Mon, 12 Feb 2018 03:40:01: Loading R template file: /home/maria/miniconda3/envs/mulled-v1-b1e6893952d2d7e4d51a13d040adcd7bea052bfdc57a24d59056014db875e749/lib/python3.6/site-packages/mageck/plot_template.RTemplate. | 7 INFO @ Mon, 26 Mar 2018 08:37:53: Loading R template file: /Users/doylemaria/miniconda3/envs/mulled-v1-9ee130591ca78526e74a59d8d6dc03cb7db20645470975762936caeac62972dc/lib/python3.6/site-packages/mageck/plot_template.RTemplate. |
| 8 INFO @ Mon, 12 Feb 2018 03:40:01: Loading R template file: /home/maria/miniconda3/envs/mulled-v1-b1e6893952d2d7e4d51a13d040adcd7bea052bfdc57a24d59056014db875e749/lib/python3.6/site-packages/mageck/plot_template_indvgene.RTemplate. | 8 INFO @ Mon, 26 Mar 2018 08:37:53: Loading R template file: /Users/doylemaria/miniconda3/envs/mulled-v1-9ee130591ca78526e74a59d8d6dc03cb7db20645470975762936caeac62972dc/lib/python3.6/site-packages/mageck/plot_template_indvgene.RTemplate. |
| 9 INFO @ Mon, 12 Feb 2018 03:40:01: Loading Rnw template file: /home/maria/miniconda3/envs/mulled-v1-b1e6893952d2d7e4d51a13d040adcd7bea052bfdc57a24d59056014db875e749/lib/python3.6/site-packages/mageck/plot_template.Rnw. | 9 INFO @ Mon, 26 Mar 2018 08:37:53: Loading Rnw template file: /Users/doylemaria/miniconda3/envs/mulled-v1-9ee130591ca78526e74a59d8d6dc03cb7db20645470975762936caeac62972dc/lib/python3.6/site-packages/mageck/plot_template.Rnw. |
| 10 DEBUG @ Mon, 12 Feb 2018 03:40:01: Setting up the visualization module... | 10 DEBUG @ Mon, 26 Mar 2018 08:37:53: Setting up the visualization module... |
| 11 DEBUG @ Mon, 12 Feb 2018 03:40:01: Given sample labels: HL60.final,KBM7.final | 11 DEBUG @ Mon, 26 Mar 2018 08:37:53: Given sample labels: HL60_final,KBM7_final |
| 12 DEBUG @ Mon, 12 Feb 2018 03:40:01: Converted index: 2 3 | 12 DEBUG @ Mon, 26 Mar 2018 08:37:53: Converted index: 2 3 |
| 13 INFO @ Mon, 12 Feb 2018 03:40:01: Treatment samples:HL60.final,KBM7.final | 13 INFO @ Mon, 26 Mar 2018 08:37:53: Treatment samples:HL60_final,KBM7_final |
| 14 INFO @ Mon, 12 Feb 2018 03:40:01: Treatment sample index:2,3 | 14 INFO @ Mon, 26 Mar 2018 08:37:53: Treatment sample index:2,3 |
| 15 DEBUG @ Mon, 12 Feb 2018 03:40:01: Given sample labels: HL60.initial,KBM7.initial | 15 DEBUG @ Mon, 26 Mar 2018 08:37:53: Given sample labels: HL60_initial,KBM7_initial |
| 16 DEBUG @ Mon, 12 Feb 2018 03:40:01: Converted index: 0 1 | 16 DEBUG @ Mon, 26 Mar 2018 08:37:53: Converted index: 0 1 |
| 17 INFO @ Mon, 12 Feb 2018 03:40:01: Control samples:HL60.initial,KBM7.initial | 17 INFO @ Mon, 26 Mar 2018 08:37:53: Control samples:HL60_initial,KBM7_initial |
| 18 INFO @ Mon, 12 Feb 2018 03:40:01: Control sample index:0,1 | 18 INFO @ Mon, 26 Mar 2018 08:37:53: Control sample index:0,1 |
| 19 DEBUG @ Mon, 12 Feb 2018 03:40:01: Initial (total) size factor: 1.6666455325878438 2.027372749328462 0.7198064117880387 0.6589869375844738 | 19 DEBUG @ Mon, 26 Mar 2018 08:37:53: Initial (total) size factor: 1.6666455325878438 2.027372749328462 0.7198064117880387 0.6589869375844738 |
| 20 DEBUG @ Mon, 12 Feb 2018 03:40:01: Median factor: 1.469870985815957 1.7759474888175155 0.6308897693810006 0.5721813161032618 | 20 DEBUG @ Mon, 26 Mar 2018 08:37:53: Median factor: 1.469870985815957 1.7759474888175155 0.6308897693810006 0.5721813161032618 |
| 21 INFO @ Mon, 12 Feb 2018 03:40:01: Final size factor: 1.469870985815957 1.7759474888175155 0.6308897693810006 0.5721813161032618 | 21 INFO @ Mon, 26 Mar 2018 08:37:53: Final size factor: 1.469870985815957 1.7759474888175155 0.6308897693810006 0.5721813161032618 |
| 22 INFO @ Mon, 12 Feb 2018 03:40:01: Writing normalized read counts to output.normalized.txt | 22 INFO @ Mon, 26 Mar 2018 08:37:53: Writing normalized read counts to output.normalized.txt |
| 23 DEBUG @ Mon, 12 Feb 2018 03:40:01: Adjusted model: 1.1175084644498339 3.4299551007579927 | 23 DEBUG @ Mon, 26 Mar 2018 08:37:53: Adjusted model: 1.1175084644498339 3.4299551007579927 |
| 24 INFO @ Mon, 12 Feb 2018 03:40:01: Raw variance calculation: 0.5 for control, 0.5 for treatment | 24 INFO @ Mon, 26 Mar 2018 08:37:53: Raw variance calculation: 0.5 for control, 0.5 for treatment |
| 25 INFO @ Mon, 12 Feb 2018 03:40:01: Adjusted variance calculation: 0.3333333333333333 for raw variance, 0.6666666666666667 for modeling | 25 INFO @ Mon, 26 Mar 2018 08:37:53: Adjusted variance calculation: 0.3333333333333333 for raw variance, 0.6666666666666667 for modeling |
| 26 INFO @ Mon, 12 Feb 2018 03:40:01: Use qnorm to reversely calculate sgRNA scores ... | 26 INFO @ Mon, 26 Mar 2018 08:37:53: Use qnorm to reversely calculate sgRNA scores ... |
| 27 DEBUG @ Mon, 12 Feb 2018 03:40:01: lower test FDR cutoff: 0.3283283283283283 | 27 DEBUG @ Mon, 26 Mar 2018 08:37:53: lower test FDR cutoff: 0.3283283283283283 |
| 28 DEBUG @ Mon, 12 Feb 2018 03:40:01: higher test FDR cutoff: 0.34534534534534533 | 28 DEBUG @ Mon, 26 Mar 2018 08:37:53: higher test FDR cutoff: 0.34534534534534533 |
| 29 INFO @ Mon, 12 Feb 2018 03:40:01: Running command: RRA -i output.plow.txt -o output.gene.low.txt -p 0.3283283283283283 --skip-gene NA --skip-gene na | 29 INFO @ Mon, 26 Mar 2018 08:37:53: Running command: RRA -i output.plow.txt -o output.gene.low.txt -p 0.3283283283283283 --skip-gene NA --skip-gene na |
| 30 INFO @ Mon, 12 Feb 2018 03:40:02: Command message: | 30 INFO @ Mon, 26 Mar 2018 08:37:53: Command message: |
| 31 INFO @ Mon, 12 Feb 2018 03:40:02: Welcome to RRA v 0.5.7. | 31 INFO @ Mon, 26 Mar 2018 08:37:53: Welcome to RRA v 0.5.7. |
| 32 INFO @ Mon, 12 Feb 2018 03:40:02: Skipping gene NA for permutation ... | 32 INFO @ Mon, 26 Mar 2018 08:37:53: Skipping gene NA for permutation ... |
| 33 INFO @ Mon, 12 Feb 2018 03:40:02: Skipping gene na for permutation ... | 33 INFO @ Mon, 26 Mar 2018 08:37:53: Skipping gene na for permutation ... |
| 34 INFO @ Mon, 12 Feb 2018 03:40:02: Reading input file... | 34 INFO @ Mon, 26 Mar 2018 08:37:53: Reading input file... |
| 35 INFO @ Mon, 12 Feb 2018 03:40:02: Summary: 999 sgRNAs, 100 genes, 1 lists; skipped sgRNAs:0 | 35 INFO @ Mon, 26 Mar 2018 08:37:53: Summary: 999 sgRNAs, 100 genes, 1 lists; skipped sgRNAs:0 |
| 36 INFO @ Mon, 12 Feb 2018 03:40:02: Computing lo-values for each group... | 36 INFO @ Mon, 26 Mar 2018 08:37:53: Computing lo-values for each group... |
| 37 INFO @ Mon, 12 Feb 2018 03:40:02: Computing false discovery rate... | 37 INFO @ Mon, 26 Mar 2018 08:37:53: Computing false discovery rate... |
| 38 INFO @ Mon, 12 Feb 2018 03:40:02: Increase the number of permutations to 1001 to get precise p values. To avoid this, use the --permutation option. | 38 INFO @ Mon, 26 Mar 2018 08:37:53: Increase the number of permutations to 1001 to get precise p values. To avoid this, use the --permutation option. |
| 39 INFO @ Mon, 12 Feb 2018 03:40:02: Permuting genes with 9 sgRNAs... | 39 INFO @ Mon, 26 Mar 2018 08:37:53: Permuting genes with 9 sgRNAs... |
| 40 INFO @ Mon, 12 Feb 2018 03:40:02: Permuting genes with 10 sgRNAs... | 40 INFO @ Mon, 26 Mar 2018 08:37:53: Permuting genes with 10 sgRNAs... |
| 41 INFO @ Mon, 12 Feb 2018 03:40:02: Number of genes under FDR adjustment: 100 | 41 INFO @ Mon, 26 Mar 2018 08:37:53: Number of genes under FDR adjustment: 100 |
| 42 INFO @ Mon, 12 Feb 2018 03:40:02: Saving to output file... | 42 INFO @ Mon, 26 Mar 2018 08:37:53: Saving to output file... |
| 43 INFO @ Mon, 12 Feb 2018 03:40:02: RRA completed. | 43 INFO @ Mon, 26 Mar 2018 08:37:53: RRA completed. |
| 44 INFO @ Mon, 12 Feb 2018 03:40:02: | 44 INFO @ Mon, 26 Mar 2018 08:37:53: |
| 45 INFO @ Mon, 12 Feb 2018 03:40:02: End command message. | 45 INFO @ Mon, 26 Mar 2018 08:37:53: End command message. |
| 46 INFO @ Mon, 12 Feb 2018 03:40:02: Running command: RRA -i output.phigh.txt -o output.gene.high.txt -p 0.34534534534534533 --skip-gene NA --skip-gene na | 46 INFO @ Mon, 26 Mar 2018 08:37:53: Running command: RRA -i output.phigh.txt -o output.gene.high.txt -p 0.34534534534534533 --skip-gene NA --skip-gene na |
| 47 INFO @ Mon, 12 Feb 2018 03:40:03: Command message: | 47 INFO @ Mon, 26 Mar 2018 08:37:53: Command message: |
| 48 INFO @ Mon, 12 Feb 2018 03:40:03: Welcome to RRA v 0.5.7. | 48 INFO @ Mon, 26 Mar 2018 08:37:53: Welcome to RRA v 0.5.7. |
| 49 INFO @ Mon, 12 Feb 2018 03:40:03: Skipping gene NA for permutation ... | 49 INFO @ Mon, 26 Mar 2018 08:37:53: Skipping gene NA for permutation ... |
| 50 INFO @ Mon, 12 Feb 2018 03:40:03: Skipping gene na for permutation ... | 50 INFO @ Mon, 26 Mar 2018 08:37:53: Skipping gene na for permutation ... |
| 51 INFO @ Mon, 12 Feb 2018 03:40:03: Reading input file... | 51 INFO @ Mon, 26 Mar 2018 08:37:53: Reading input file... |
| 52 INFO @ Mon, 12 Feb 2018 03:40:03: Summary: 999 sgRNAs, 100 genes, 1 lists; skipped sgRNAs:0 | 52 INFO @ Mon, 26 Mar 2018 08:37:53: Summary: 999 sgRNAs, 100 genes, 1 lists; skipped sgRNAs:0 |
| 53 INFO @ Mon, 12 Feb 2018 03:40:03: Computing lo-values for each group... | 53 INFO @ Mon, 26 Mar 2018 08:37:53: Computing lo-values for each group... |
| 54 INFO @ Mon, 12 Feb 2018 03:40:03: Computing false discovery rate... | 54 INFO @ Mon, 26 Mar 2018 08:37:53: Computing false discovery rate... |
| 55 INFO @ Mon, 12 Feb 2018 03:40:03: Increase the number of permutations to 1001 to get precise p values. To avoid this, use the --permutation option. | 55 INFO @ Mon, 26 Mar 2018 08:37:53: Increase the number of permutations to 1001 to get precise p values. To avoid this, use the --permutation option. |
| 56 INFO @ Mon, 12 Feb 2018 03:40:03: Permuting genes with 9 sgRNAs... | 56 INFO @ Mon, 26 Mar 2018 08:37:53: Permuting genes with 9 sgRNAs... |
| 57 INFO @ Mon, 12 Feb 2018 03:40:03: Permuting genes with 10 sgRNAs... | 57 INFO @ Mon, 26 Mar 2018 08:37:53: Permuting genes with 10 sgRNAs... |
| 58 INFO @ Mon, 12 Feb 2018 03:40:03: Number of genes under FDR adjustment: 100 | 58 INFO @ Mon, 26 Mar 2018 08:37:53: Number of genes under FDR adjustment: 100 |
| 59 INFO @ Mon, 12 Feb 2018 03:40:03: Saving to output file... | 59 INFO @ Mon, 26 Mar 2018 08:37:53: Saving to output file... |
| 60 INFO @ Mon, 12 Feb 2018 03:40:03: RRA completed. | 60 INFO @ Mon, 26 Mar 2018 08:37:53: RRA completed. |
| 61 INFO @ Mon, 12 Feb 2018 03:40:03: | 61 INFO @ Mon, 26 Mar 2018 08:37:53: |
| 62 INFO @ Mon, 12 Feb 2018 03:40:03: End command message. | 62 INFO @ Mon, 26 Mar 2018 08:37:53: End command message. |
| 63 DEBUG @ Mon, 12 Feb 2018 03:40:03: Sorting the merged items by negative selection... | 63 DEBUG @ Mon, 26 Mar 2018 08:37:53: Sorting the merged items by negative selection... |
| 64 INFO @ Mon, 12 Feb 2018 03:40:03: Loading top 10 genes from output.gene.low.txt: ACIN1,ACTR8,AHCY,ACLY,AATF,AGBL5,AHCTF1,ABT1,ADIRF,ABCF1 | 64 INFO @ Mon, 26 Mar 2018 08:37:53: Loading top 10 genes from output.gene.low.txt: ACIN1,ACTR8,AHCY,ACLY,AATF,AGBL5,AHCTF1,ABT1,ADIRF,ABCF1 |
| 65 DEBUG @ Mon, 12 Feb 2018 03:40:03: Column index:3 | 65 DEBUG @ Mon, 26 Mar 2018 08:37:53: Column index:3 |
| 66 INFO @ Mon, 12 Feb 2018 03:40:03: Loading top 10 genes from output.gene.high.txt: ACRC,AGAP3,ADCK4,AHRR,ADRBK1,ADK,ADCK1,ADARB2,ACSS2,ADNP | 66 INFO @ Mon, 26 Mar 2018 08:37:53: Loading top 10 genes from output.gene.high.txt: ACRC,AGAP3,ADCK4,AHRR,ADRBK1,ADK,ADCK1,ADARB2,ACSS2,ADNP |
| 67 DEBUG @ Mon, 12 Feb 2018 03:40:03: Column index:9 | 67 DEBUG @ Mon, 26 Mar 2018 08:37:53: Column index:9 |
| 68 INFO @ Mon, 12 Feb 2018 03:40:03: Running command: rm output.plow.txt | 68 INFO @ Mon, 26 Mar 2018 08:37:53: Running command: rm output.plow.txt |
| 69 INFO @ Mon, 12 Feb 2018 03:40:03: Running command: rm output.phigh.txt | 69 INFO @ Mon, 26 Mar 2018 08:37:53: Running command: rm output.phigh.txt |
| 70 INFO @ Mon, 12 Feb 2018 03:40:03: Running command: rm output.gene.low.txt | 70 INFO @ Mon, 26 Mar 2018 08:37:54: Running command: rm output.gene.low.txt |
| 71 INFO @ Mon, 12 Feb 2018 03:40:03: Running command: rm output.gene.high.txt | 71 INFO @ Mon, 26 Mar 2018 08:37:54: Running command: rm output.gene.high.txt |
| 72 INFO @ Mon, 12 Feb 2018 03:40:03: Running command: cd ./; Rscript output.R | 72 INFO @ Mon, 26 Mar 2018 08:37:54: Running command: cd ./; Rscript output.R |
| 73 INFO @ Mon, 12 Feb 2018 03:40:04: Command message: | 73 INFO @ Mon, 26 Mar 2018 08:37:59: Command message: |
| 74 INFO @ Mon, 12 Feb 2018 03:40:04: null device | 74 INFO @ Mon, 26 Mar 2018 08:37:59: null device |
| 75 INFO @ Mon, 12 Feb 2018 03:40:04: 1 | 75 INFO @ Mon, 26 Mar 2018 08:37:59: 1 |
| 76 INFO @ Mon, 12 Feb 2018 03:40:04: Writing to file output_summary.tex | 76 INFO @ Mon, 26 Mar 2018 08:37:59: Writing to file output_summary.tex |
| 77 INFO @ Mon, 12 Feb 2018 03:40:04: Processing code chunks with options ... | 77 INFO @ Mon, 26 Mar 2018 08:37:59: Processing code chunks with options ... |
| 78 INFO @ Mon, 12 Feb 2018 03:40:04: 1 : keep.source term verbatim (label = funcdef, output_summary.Rnw:27) | 78 INFO @ Mon, 26 Mar 2018 08:37:59: 1 : keep.source term verbatim (label = funcdef, output_summary.Rnw:27) |
| 79 INFO @ Mon, 12 Feb 2018 03:40:04: 2 : keep.source term tex (label = tab1, output_summary.Rnw:37) | 79 INFO @ Mon, 26 Mar 2018 08:37:59: 2 : keep.source term tex (label = tab1, output_summary.Rnw:37) |
| 80 INFO @ Mon, 12 Feb 2018 03:40:04: 3 : keep.source term verbatim (output_summary.Rnw:77) | 80 INFO @ Mon, 26 Mar 2018 08:37:59: 3 : keep.source term verbatim (output_summary.Rnw:77) |
| 81 INFO @ Mon, 12 Feb 2018 03:40:04: 4 : keep.source term verbatim pdf (output_summary.Rnw:83) | 81 INFO @ Mon, 26 Mar 2018 08:37:59: 4 : keep.source term verbatim pdf (output_summary.Rnw:83) |
| 82 INFO @ Mon, 12 Feb 2018 03:40:04: 5 : keep.source term verbatim pdf (output_summary.Rnw:201) | 82 INFO @ Mon, 26 Mar 2018 08:37:59: 5 : keep.source term verbatim pdf (output_summary.Rnw:201) |
| 83 INFO @ Mon, 12 Feb 2018 03:40:04: 6 : keep.source term verbatim pdf (output_summary.Rnw:345) | 83 INFO @ Mon, 26 Mar 2018 08:37:59: 6 : keep.source term verbatim pdf (output_summary.Rnw:345) |
| 84 INFO @ Mon, 12 Feb 2018 03:40:04: 7 : keep.source term verbatim pdf (output_summary.Rnw:489) | 84 INFO @ Mon, 26 Mar 2018 08:37:59: 7 : keep.source term verbatim pdf (output_summary.Rnw:489) |
| 85 INFO @ Mon, 12 Feb 2018 03:40:04: 8 : keep.source term verbatim (output_summary.Rnw:567) | 85 INFO @ Mon, 26 Mar 2018 08:37:59: 8 : keep.source term verbatim (output_summary.Rnw:567) |
| 86 INFO @ Mon, 12 Feb 2018 03:40:04: 9 : keep.source term verbatim pdf (output_summary.Rnw:573) | 86 INFO @ Mon, 26 Mar 2018 08:37:59: 9 : keep.source term verbatim pdf (output_summary.Rnw:573) |
| 87 INFO @ Mon, 12 Feb 2018 03:40:04: 10 : keep.source term verbatim pdf (output_summary.Rnw:691) | 87 INFO @ Mon, 26 Mar 2018 08:37:59: 10 : keep.source term verbatim pdf (output_summary.Rnw:691) |
| 88 INFO @ Mon, 12 Feb 2018 03:40:04: 11 : keep.source term verbatim pdf (output_summary.Rnw:835) | 88 INFO @ Mon, 26 Mar 2018 08:37:59: 11 : keep.source term verbatim pdf (output_summary.Rnw:835) |
| 89 INFO @ Mon, 12 Feb 2018 03:40:04: 12 : keep.source term verbatim pdf (output_summary.Rnw:979) | 89 INFO @ Mon, 26 Mar 2018 08:37:59: 12 : keep.source term verbatim pdf (output_summary.Rnw:979) |
| 90 INFO @ Mon, 12 Feb 2018 03:40:04: | 90 INFO @ Mon, 26 Mar 2018 08:37:59: |
| 91 INFO @ Mon, 12 Feb 2018 03:40:04: You can now run (pdf)latex on ‘output_summary.tex’ | 91 INFO @ Mon, 26 Mar 2018 08:37:59: You can now run (pdf)latex on ‘output_summary.tex’ |
| 92 INFO @ Mon, 12 Feb 2018 03:40:04: Error in texi2dvi("output_summary.tex", pdf = TRUE) : | 92 INFO @ Mon, 26 Mar 2018 08:37:59: |
| 93 INFO @ Mon, 12 Feb 2018 03:40:04: pdflatex is not available | 93 INFO @ Mon, 26 Mar 2018 08:37:59: End command message. |
| 94 INFO @ Mon, 12 Feb 2018 03:40:04: Execution halted | 94 INFO @ Mon, 26 Mar 2018 08:37:59: Running command: cd ./; rm -rf output_summary-*.pdf |
| 95 INFO @ Mon, 12 Feb 2018 03:40:04: | 95 INFO @ Mon, 26 Mar 2018 08:37:59: Command message: |
| 96 INFO @ Mon, 12 Feb 2018 03:40:04: End command message. | 96 INFO @ Mon, 26 Mar 2018 08:37:59: |
| 97 INFO @ Mon, 12 Feb 2018 03:40:04: Running command: cd ./; rm -rf output_summary-*.pdf | 97 INFO @ Mon, 26 Mar 2018 08:37:59: End command message. |
| 98 INFO @ Mon, 12 Feb 2018 03:40:04: Command message: | 98 INFO @ Mon, 26 Mar 2018 08:37:59: Running command: cd ./; rm -rf output_summary.aux |
| 99 INFO @ Mon, 12 Feb 2018 03:40:04: | 99 INFO @ Mon, 26 Mar 2018 08:37:59: Command message: |
| 100 INFO @ Mon, 12 Feb 2018 03:40:04: End command message. | 100 INFO @ Mon, 26 Mar 2018 08:37:59: |
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| 102 INFO @ Mon, 12 Feb 2018 03:40:04: Command message: | 102 INFO @ Mon, 26 Mar 2018 08:37:59: Running command: cd ./; rm -rf output_summary.tex |
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| 104 INFO @ Mon, 12 Feb 2018 03:40:04: End command message. | 104 INFO @ Mon, 26 Mar 2018 08:37:59: |
| 105 INFO @ Mon, 12 Feb 2018 03:40:04: Running command: cd ./; rm -rf output_summary.tex | 105 INFO @ Mon, 26 Mar 2018 08:37:59: End command message. |
| 106 INFO @ Mon, 12 Feb 2018 03:40:04: Command message: | 106 INFO @ Mon, 26 Mar 2018 08:37:59: Running command: cd ./; rm -rf output_summary.toc |
| 107 INFO @ Mon, 12 Feb 2018 03:40:04: | 107 INFO @ Mon, 26 Mar 2018 08:37:59: Command message: |
| 108 INFO @ Mon, 12 Feb 2018 03:40:04: End command message. | 108 INFO @ Mon, 26 Mar 2018 08:37:59: |
| 109 INFO @ Mon, 12 Feb 2018 03:40:04: Running command: cd ./; rm -rf output_summary.toc | 109 INFO @ Mon, 26 Mar 2018 08:37:59: End command message. |
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