Mercurial > repos > iuc > mageck_test

comparison mageck_test.xml @ 6:9b4f4533c9ee draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit e9c464070ad7c01b830345a550477e8dfdcac5ae"
author iuc
date Wed, 01 Apr 2020 06:15:24 -0400
parents 38073c236d71
children
comparison
equal deleted inserted replaced
5:688a8eccea71 6:9b4f4533c9ee
110 <param name="adjust_method" argument="--adjust-method" type="select" optional="true" label="P-Value Adjustment Method" help="Method for sgRNA-level p-value adjustment, including False Discovery Rate (FDR), Holm's method (Holm), or Pounds's method (Pounds). Default: FDR"> 110 <param name="adjust_method" argument="--adjust-method" type="select" optional="true" label="P-Value Adjustment Method" help="Method for sgRNA-level p-value adjustment, including False Discovery Rate (FDR), Holm's method (Holm), or Pounds's method (Pounds). Default: FDR">
111 <option value="fdr" selected="True">FDR</option> 111 <option value="fdr" selected="True">FDR</option>
112 <option value="holm">Holm</option> 112 <option value="holm">Holm</option>
113 <option value="pounds">Pounds</option> 113 <option value="pounds">Pounds</option>
114 </param> 114 </param>
115 <param name="var_samples" argument="--variance-from-all-samples" type="boolean" truevalue="--variance-from-all-samples" falsevalue="" checked="false" optional="true" label="Estimate the variance from all samples, instead of from only control samples" help="Use this option only if you believe there are relatively few essential sgRNAs or genes between control and treatment samples" /> 115 <param name="var_samples" argument="--variance-estimation-samples" type="boolean" truevalue="--variance-estimation-samples" falsevalue="" checked="false" optional="true" label="Estimate variances from designated samples" help="To use, specify sample label or sample index for estimating variances, separated by comma (,). See -t/--treatment-id option for specifying samples." />
116 <expand macro="sort_criteria" /> 116 <expand macro="sort_criteria" />
117 <param name="remove_zero" argument="--remove-zero" type="select" optional="true" label="Remove zero" help="Remove sgRNAs whose mean value is zero in Control, Treatment, Both control/treatment, or Any control/treatment sample. Default: Both (remove those sgRNAs that are zero in both control and treatment samples)" > 117 <param name="remove_zero" argument="--remove-zero" type="select" optional="true" label="Remove zero" help="Remove sgRNAs whose mean value is zero in Control, Treatment, Both control/treatment, or Any control/treatment sample. Default: Both (remove those sgRNAs that are zero in both control and treatment samples)" >
118 <option value="none" >None</option> 118 <option value="none" >None</option>
119 <option value="control">Control</option> 119 <option value="control">Control</option>
120 <option value="treatment">Treatment</option> 120 <option value="treatment">Treatment</option>