Mercurial > repos > iuc > magicblast

diff macros.xml @ 0:e6799e98c5fb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/blast commit 15fc6c06f743bae276ff02dc405e7da61a07bd08"
author iuc
date Tue, 05 Apr 2022 12:11:08 +0000
parents
children aea6702a3cd5
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Tue Apr 05 12:11:08 2022 +0000
@@ -0,0 +1,33 @@
+<macros>
+    <token name="@TOOL_VERSION@">1.6.0</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">20.09</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">magicblast</requirement>
+            <requirement type="package" version="1.15">samtools</requirement>
+        </requirements>
+    </xml>
+    <xml name="output_sort_param">
+        <param name="output_sort" type="select" label="BAM sorting mode" help="The 'Not sorted' option can significantly extend the run time of the tool (it runs using a single thread)">
+            <option value="coordinate" selected="True">Sort by chromosomal coordinates</option>
+            <option value="name">Sort by read names</option>
+            <option value="unsorted">Not sorted (sorted as input)</option>
+        </param>
+    </xml>
+    <xml name="sanitize_query" token_validinitial="string.ascii_letters,string.digits,string.whitespace,string.punctuation">
+        <sanitizer>
+            <valid initial="@VALIDINITIAL@">
+                <remove value="&apos;"/>
+            </valid>
+            <mapping initial="none">
+                <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;"/>
+            </mapping>
+        </sanitizer>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1186/s12859-019-2996-x</citation>
+        </citations>
+    </xml>
+</macros>