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comparison maker.xml @ 3:96ac930d84fa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit df4df9980131dcfb7b77de9e625407926fb4d016
author iuc
date Mon, 06 May 2019 10:06:04 -0400
parents d3a2072d8745
children 5e96efe6e6c6
comparison
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2:d3a2072d8745 3:96ac930d84fa
33 tar -C 'augustus_dir/species/' -xzvf '${abinitio_gene_prediction.aug_prediction.augustus_model}' > /dev/null && 33 tar -C 'augustus_dir/species/' -xzvf '${abinitio_gene_prediction.aug_prediction.augustus_model}' > /dev/null &&
34 34
35 export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && 35 export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ &&
36 #end if 36 #end if
37 37
38 mpiexec -n \${GALAXY_SLOTS:-4} maker maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null 38 mpiexec -n \${GALAXY_SLOTS:-4} maker --ignore_nfs_tmp maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null
39 39
40 && 40 &&
41 41
42 gff3_merge -d *.maker.output/*_master_datastore_index.log -o '${output_full}' 42 gff3_merge -d *.maker.output/*_master_datastore_index.log -o '${output_full}'
43 43