Mercurial > repos > iuc > maker

comparison maker.xml @ 6:d46d803ca6cc draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 6ba137e32243a6de1fb83a7d4b88f9283db5dd01"
author iuc
date Tue, 05 Jan 2021 09:00:59 +0000
parents 5201ec38c01f
children 7bac6f5fcfa2
comparison
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5:5201ec38c01f 6:d46d803ca6cc
37 tar -C 'augustus_dir/species/' -xzvf '${abinitio_gene_prediction.aug_prediction.augustus_model}' > /dev/null && 37 tar -C 'augustus_dir/species/' -xzvf '${abinitio_gene_prediction.aug_prediction.augustus_model}' > /dev/null &&
38 38
39 export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && 39 export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ &&
40 #end if 40 #end if
41 41
42 MPI_CMD="mpiexec -n \${GALAXY_SLOTS:-4}" && 42 MPI_CMD="" &&
43 if [ "\$MAKER_NO_MPI" != "1" ]; then 43 if [ "\$MAKER_MPI" == "1" ]; then
44 MPI_CMD=""; 44 MPI_CMD="mpiexec -n \${GALAXY_SLOTS:-4}";
45 fi && 45 fi &&
46 46
47 \${MPI_CMD} maker --ignore_nfs_tmp maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null 47 \${MPI_CMD} maker --ignore_nfs_tmp maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null
48 48
49 && 49 &&