Mercurial > repos > iuc > maker_map_ids

comparison test-data/evidences_reuse.gff3 @ 0:060ea7339911 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 2896dcfd180800d00ea413a59264ef8b11788b8e
author iuc
date Thu, 19 Oct 2017 15:59:20 -0400
parents
children 1b3626164087
comparison
equal deleted inserted replaced
-1:000000000000 0:060ea7339911
1 ##gff-version 3
2 HS08198 . contig 1 2344 . . . ID=HS08198;Name=HS08198
3 ###
4 HS08198 repeatmasker match 578 651 13 + . ID=HS08198:hit:10:1.3.0.0;Name=species:%28AGAAGGT%29n|genus:Simple_repeat;Target=species:%28AGAAGGT%29n|genus:Simple_repeat 1 75 +
5 HS08198 repeatmasker match_part 578 651 13 + . ID=HS08198:hsp:27:1.3.0.0;Parent=HS08198:hit:10:1.3.0.0;Target=species:%2528AGAAGGT%2529n|genus:Simple_repeat 1 75 +
6 ###
7 HS08198 blastn expressed_sequence_match 444 1848 140 + . ID=HS08198:hit:11:3.12.0.0;Name=HS08198.g2;score=140
8 HS08198 blastn match_part 444 583 140 + . ID=HS08198:hsp:28:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 79 218 +;Gap=M140
9 HS08198 blastn match_part 445 523 79 + . ID=HS08198:hsp:29:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 1 79 +;Gap=M79
10 HS08198 blastn match_part 808 895 88 + . ID=HS08198:hsp:30:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 214 301 +;Gap=M88
11 HS08198 blastn match_part 1053 1123 71 + . ID=HS08198:hsp:31:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 301 371 +;Gap=M71
12 HS08198 blastn match_part 1206 1315 110 + . ID=HS08198:hsp:32:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 370 479 +;Gap=M110
13 HS08198 blastn match_part 1586 1689 104 + . ID=HS08198:hsp:33:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 479 582 +;Gap=M104
14 HS08198 blastn match_part 1771 1848 78 + . ID=HS08198:hsp:34:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 581 658 +;Gap=M78
15 HS08198 est2genome expressed_sequence_match 352 1848 2869 + . ID=HS08198:hit:12:3.12.0.0;Name=HS08198.g2;score=2869
16 HS08198 est2genome match_part 352 397 2869 + . ID=HS08198:hsp:35:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 3 52 +;Gap=M46
17 HS08198 est2genome match_part 421 582 2869 + . ID=HS08198:hsp:36:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 53 217 +;Gap=M162
18 HS08198 est2genome match_part 812 894 2869 + . ID=HS08198:hsp:37:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 218 300 +;Gap=M83
19 HS08198 est2genome match_part 1053 1123 2869 + . ID=HS08198:hsp:38:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 301 371 +;Gap=M71
20 HS08198 est2genome match_part 1208 1315 2869 + . ID=HS08198:hsp:39:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 372 479 +;Gap=M108
21 HS08198 est2genome match_part 1587 1688 2869 + . ID=HS08198:hsp:40:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 480 581 +;Gap=M102
22 HS08198 est2genome match_part 1772 1848 2869 + . ID=HS08198:hsp:41:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 582 658 +;Gap=M77
23 HS04636 . contig 1 9453 . . . ID=HS04636;Name=HS04636
24 ###
25 HS04636 repeatmasker match 3852 3888 12 + . ID=HS04636:hit:0:1.3.0.0;Name=species:%28TTGTAAT%29n|genus:Simple_repeat;Target=species:%28TTGTAAT%29n|genus:Simple_repeat 1 37 +
26 HS04636 repeatmasker match_part 3852 3888 12 + . ID=HS04636:hsp:0:1.3.0.0;Parent=HS04636:hit:0:1.3.0.0;Target=species:%2528TTGTAAT%2529n|genus:Simple_repeat 1 37 +
27 HS04636 repeatmasker match 6028 6072 21 + . ID=HS04636:hit:1:1.3.0.0;Name=species:%28TTGT%29n|genus:Simple_repeat;Target=species:%28TTGT%29n|genus:Simple_repeat 1 46 +
28 HS04636 repeatmasker match_part 6028 6072 21 + . ID=HS04636:hsp:1:1.3.0.0;Parent=HS04636:hit:1:1.3.0.0;Target=species:%2528TTGT%2529n|genus:Simple_repeat 1 46 +
29 HS04636 repeatmasker match 3840 3847 17 + . ID=HS04636:hit:2:1.3.0.0;Name=species:%28ATAC%29n|genus:Simple_repeat;Target=species:%28ATAC%29n|genus:Simple_repeat 3 57 +
30 HS04636 repeatmasker match_part 3840 3847 17 + . ID=HS04636:hsp:2:1.3.0.0;Parent=HS04636:hit:2:1.3.0.0;Target=species:%2528ATAC%2529n|genus:Simple_repeat 3 57 +
31 HS04636 repeatmasker match 3791 3839 22 + . ID=HS04636:hit:3:1.3.0.0;Name=species:%28AC%29n|genus:Simple_repeat;Target=species:%28AC%29n|genus:Simple_repeat 1 49 +
32 HS04636 repeatmasker match_part 3791 3839 22 + . ID=HS04636:hsp:3:1.3.0.0;Parent=HS04636:hit:3:1.3.0.0;Target=species:%2528AC%2529n|genus:Simple_repeat 1 49 +
33 HS04636 repeatmasker match 9419 9435 16 + . ID=HS04636:hit:4:1.3.0.0;Name=species:%28A%29n|genus:Simple_repeat;Target=species:%28A%29n|genus:Simple_repeat 1 17 +
34 HS04636 repeatmasker match_part 9419 9435 16 + . ID=HS04636:hsp:4:1.3.0.0;Parent=HS04636:hit:4:1.3.0.0;Target=species:%2528A%2529n|genus:Simple_repeat 1 17 +
35 HS04636 repeatmasker match 939 980 13 + . ID=HS04636:hit:5:1.3.0.0;Name=species:%28CCGCG%29n|genus:Simple_repeat;Target=species:%28CCGCG%29n|genus:Simple_repeat 1 42 +
36 HS04636 repeatmasker match_part 939 980 13 + . ID=HS04636:hsp:5:1.3.0.0;Parent=HS04636:hit:5:1.3.0.0;Target=species:%2528CCGCG%2529n|genus:Simple_repeat 1 42 +
37 HS04636 repeatmasker match 6918 6977 17 + . ID=HS04636:hit:6:1.3.0.0;Name=species:%28TATT%29n|genus:Simple_repeat;Target=species:%28TATT%29n|genus:Simple_repeat 1 54 +
38 HS04636 repeatmasker match_part 6918 6977 17 + . ID=HS04636:hsp:6:1.3.0.0;Parent=HS04636:hit:6:1.3.0.0;Target=species:%2528TATT%2529n|genus:Simple_repeat 1 54 +
39 HS04636 repeatmasker match 4518 4541 17 + . ID=HS04636:hit:7:1.3.0.0;Name=species:%28TTTA%29n|genus:Simple_repeat;Target=species:%28TTTA%29n|genus:Simple_repeat 1 24 +
40 HS04636 repeatmasker match_part 4518 4541 17 + . ID=HS04636:hsp:7:1.3.0.0;Parent=HS04636:hit:7:1.3.0.0;Target=species:%2528TTTA%2529n|genus:Simple_repeat 1 24 +
41 ###
42 HS04636 blastn expressed_sequence_match 1815 6903 120 + . ID=HS04636:hit:8:3.12.0.0;Name=HS04636.g1;score=120
43 HS04636 blastn match_part 1815 1934 120 + . ID=HS04636:hsp:8:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 129 248 +;Gap=M120
44 HS04636 blastn match_part 1815 1845 31 + . ID=HS04636:hsp:9:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 50 80 +;Gap=M31
45 HS04636 blastn match_part 2055 2198 144 + . ID=HS04636:hsp:10:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 249 392 +;Gap=M144
46 HS04636 blastn match_part 2852 2997 146 + . ID=HS04636:hsp:11:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 393 538 +;Gap=M146
47 HS04636 blastn match_part 3424 3609 186 + . ID=HS04636:hsp:12:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 535 720 +;Gap=M186
48 HS04636 blastn match_part 4339 4423 85 + . ID=HS04636:hsp:13:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 718 802 +;Gap=M85
49 HS04636 blastn match_part 4541 4790 250 + . ID=HS04636:hsp:14:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 801 1050 +;Gap=M250
50 HS04636 blastn match_part 5068 5360 293 + . ID=HS04636:hsp:15:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 1046 1338 +;Gap=M293
51 HS04636 blastn match_part 5859 6008 150 + . ID=HS04636:hsp:16:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 1336 1485 +;Gap=M150
52 HS04636 blastn match_part 6490 6903 414 + . ID=HS04636:hsp:17:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 1481 1894 +;Gap=M414
53 HS04636 est2genome expressed_sequence_match 1813 6903 8728 + . ID=HS04636:hit:9:3.12.0.0;Name=HS04636.g1;score=8728
54 HS04636 est2genome match_part 1813 1934 8728 + . ID=HS04636:hsp:18:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 127 248 +;Gap=M122
55 HS04636 est2genome match_part 2055 2198 8728 + . ID=HS04636:hsp:19:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 249 392 +;Gap=M144
56 HS04636 est2genome match_part 2852 2995 8728 + . ID=HS04636:hsp:20:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 393 536 +;Gap=M144
57 HS04636 est2genome match_part 3426 3607 8728 + . ID=HS04636:hsp:21:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 537 718 +;Gap=M182
58 HS04636 est2genome match_part 4340 4423 8728 + . ID=HS04636:hsp:22:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 719 802 +;Gap=M84
59 HS04636 est2genome match_part 4543 4789 8728 + . ID=HS04636:hsp:23:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 803 1049 +;Gap=M247
60 HS04636 est2genome match_part 5072 5358 8728 + . ID=HS04636:hsp:24:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 1050 1336 +;Gap=M287
61 HS04636 est2genome match_part 5860 6007 8728 + . ID=HS04636:hsp:25:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 1337 1484 +;Gap=M148
62 HS04636 est2genome match_part 6494 6903 8728 + . ID=HS04636:hsp:26:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 1485 1894 +;Gap=M410