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comparison test-data/reference_misincorporation.txt @ 2:0287e2f82b64 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/map_damage commit 54378f7937205ec8ddf87440a5d78c3d0d3c8efa
author iuc
date Tue, 22 Jul 2025 09:02:06 +0000
parents 3db999d4e0c1
children
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1:761b6fdcac6e 2:0287e2f82b64
1 # table produced by mapDamage version 2.2.2 1 # table produced by mapDamage version 2.2.3
2 # using mapped file test_align.bam and ref.fa as reference file 2 # using mapped file alignment.sam and reference.fa as reference file
3 # Chr: reference from sam/bam header, End: from which termini of DNA sequences, Std: strand of reads 3 # Chr: reference from sam/bam header, End: from which termini of DNA sequences, Std: strand of reads
4 Chr End Std Pos A C G T Total G>A C>T A>G T>C A>C A>T C>G C>A T>G T>A G>C G>T A>- T>- C>- G>- ->A ->T ->C ->G S 4 Chr End Std Pos A C G T Total G>A C>T A>G T>C A>C A>T C>G C>A T>G T>A G>C G>T A>- T>- C>- G>- ->A ->T ->C ->G S
5 minc:123214052 3p + 1 0 1 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 minc:123214052 3p + 1 0 1 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
6 minc:123214052 3p + 2 1 0 1 1 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 minc:123214052 3p + 2 1 0 1 1 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
7 minc:123214052 3p + 3 0 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 minc:123214052 3p + 3 0 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0