Mercurial > repos > iuc > map_param_value

annotate map_param_value.xml @ 0:43d7b3642a30 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
author iuc
date Sun, 16 Oct 2022 08:05:37 +0000
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children a01f088d0e5e
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43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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1 <tool name="Map parameter value" id="map_param_value" version="0.1.0" tool_type="expression" profile="22.01">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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2 <macros>
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3 <xml name="when_element" tokens="type_selection">
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iuc
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4 <param name="input_param" type="@TYPE_SELECTION@" optional="true" label="Map this parameter value to a different value"/>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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5 <repeat name="mappings" label="Add value mapping">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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6 <param name="from" type="@TYPE_SELECTION@" optional="true" label="Map from this value"></param>
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7 <param name="to" type="text" label="to this value" help="This value must be coercable to the selected output parameter type"></param>
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iuc
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8 </repeat>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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9 </xml>
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10 </macros>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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11 <expression type="ecma5.1">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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12 <![CDATA[{
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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13 const source = $job.input_param_type.input_param;
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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14 const mappings = $job.input_param_type.mappings;
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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15
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16 const coerceToOutput = function(value) {
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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17 switch($job.output_param_type) {
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18 case "integer":
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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19 return parseInt(value)
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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20 case "float":
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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21 return parseFloat(value)
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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22 case "boolean":
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23 if (value == "false" || value == "False") {
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24 return false
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25 }
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26 return !!value
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27 case "text":
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28 return value
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29 }
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30 }
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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31
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32 for ( var i = 0; i < mappings.length; i++ ) {
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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33 if ( String(mappings[i].from) == source ) {
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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34 return { output: coerceToOutput(mappings[i].to) };
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35 }
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36 }
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37 if ( $job.unmapped.on_unmapped == "fail" ) {
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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38 return { __error_message: `text_param ${source} not found in mapping values.` };
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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39 } else if ( $job.unmapped.on_unmapped == "default" ) {
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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40 return { output: coerceToOutput($job.unmapped.default_value) };
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41 }
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42 return { output: coerceToOutput(source) };
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43 }]]>
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44 </expression>
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45 <inputs>
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46 <conditional name="input_param_type">
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47 <param name="type" type="select" label="Select type of input parameter to match">
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48 <option value="text" selected="true">Text</option>
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49 <option value="integer">Integer</option>
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50 <option value="float">Float</option>
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51 <option value="boolean">Boolean</option>
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52 </param>
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53 <when value="text">
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54 <expand macro="when_element" type_selection="text"/>
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55 </when>
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56 <when value="integer">
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57 <expand macro="when_element" type_selection="integer"/>
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58 </when>
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59 <when value="float">
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60 <expand macro="when_element" type_selection="float"/>
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61 </when>
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62 <when value="boolean">
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63 <expand macro="when_element" type_selection="boolean"/>
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64 </when>
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65 </conditional>
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66 <param name="output_param_type" type="select" label="Select type of parameter to output">
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67 <option value="text">Text</option>
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68 <option value="integer">Integer</option>
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69 <option value="float">Float</option>
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70 <option value="boolean">Boolean</option>
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71 </param>
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72 <conditional name="unmapped">
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73 <param name="on_unmapped" type="select" label="Select how">
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74 <option value="input">Use unmodified input parameter value if input parameter value not found in mappings</option>
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75 <option value="fail">Fail if input parameter value not found in mappings</option>
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76 <option value="default">Provide a default value to use if input parameter value not found in mappings</option>
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77 </param>
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78 <when value="input" />
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79 <when value="fail" />
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80 <when value="default">
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81 <param name="default_value" type="text" label="Use this value if the input parameter value was not found in mappings"/>
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82 </when>
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83 </conditional>
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84 </inputs>
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85 <outputs>
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86 <output type="text" name="output_param_text" from="output">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
87 <filter>output_param_type == 'text'</filter>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
88 </output>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
89 <output type="integer" name="output_param_integer" from="output">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
90 <filter>output_param_type == 'integer'</filter>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
91 </output>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
92 <output type="float" name="output_param_float" from="output">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
93 <filter>output_param_type == 'float'</filter>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
94 </output>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
95 <output type="boolean" name="output_param_boolean" from="output">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
96 <filter>output_param_type == 'boolean'</filter>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
97 </output>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
98 </outputs>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
99 <tests>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
100 <test expect_num_outputs="1">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
101 <conditional name="input_param_type">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
102 <param name="type" value="text"/>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
103 <param name="input_param" value="A" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
104 <repeat name="mappings">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
105 <param name="from" value="A" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
106 <param name="to" value="B" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
107 </repeat>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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108 </conditional>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
109 <output name="output_param_text" value_json="&quot;B&quot;" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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110 </test>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
111 <test expect_num_outputs="1">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
112 <conditional name="input_param_type">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
113 <param name="input_param" value="C" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
114 <repeat name="mappings">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
115 <param name="from" value="A" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
116 <param name="to" value="B" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
117 </repeat>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
118 </conditional>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
119 <output name="output_param_text" value_json="&quot;C&quot;" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
120 </test>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
121 <test expect_num_outputs="1" expect_failure="true">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
122 <conditional name="input_param_type">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
123 <param name="input_param" value="C" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
124 <repeat name="mappings">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
125 <param name="from" value="A" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
126 <param name="to" value="B" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
127 </repeat>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
128 </conditional>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
129 <conditional name="unmapped">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
130 <param name="on_unmapped" value="fail"/>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
131 </conditional>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
132 </test>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
133 <test expect_num_outputs="1">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
134 <conditional name="input_param_type">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
135 <param name="input_param" value="C" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
136 <repeat name="mappings">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
137 <param name="from" value="A" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
138 <param name="to" value="B" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
139 </repeat>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
140 </conditional>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
141 <conditional name="unmapped">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
142 <param name="on_unmapped" value="default"/>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
143 <param name="default_value" value="D"/>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
144 </conditional>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
145 <param name="output_param_text" value_json="&quot;D&quot;" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
146 </test>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
147 <test expect_num_outputs="1">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
148 <conditional name="input_param_type">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
149 <param name="input_param" value="C" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
150 <repeat name="mappings">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
151 <param name="from" value="A" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
152 <param name="to" value="B" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
153 </repeat>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
154 </conditional>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
155 <conditional name="unmapped">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
156 <param name="on_unmapped" value="default"/>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
157 <param name="default_value" value="X"/>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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158 </conditional>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
159 <param name="output_param_text" value_json="&quot;X&quot;" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
160 </test>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
161 <test expect_num_outputs="1">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
162 <conditional name="input_param_type">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
163 <param name="input_param" value="C" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
164 <repeat name="mappings">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
165 <param name="from" value="A" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
166 <param name="to" value="B" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
167 </repeat>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
168 <repeat name="mappings">
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
169 <param name="from" value="C" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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diff changeset
170 <param name="to" value="D" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
171 </repeat>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
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172 </conditional>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
iuc
parents:
diff changeset
173 <param name="output_param_text" value_json="&quot;D&quot;" />
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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174 </test>
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175 <test expect_num_outputs="1">
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176 <conditional name="input_param_type">
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177 <param name="type" value="integer" />
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178 <param name="input_param" value="42" />
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179 <repeat name="mappings">
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180 <param name="from" value="42" />
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181 <param name="to" value="true" />
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182 </repeat>
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183 </conditional>
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184 <param name="output_param_type" value="boolean"/>
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185 <param name="output_param_boolean" value_json="true" />
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186 </test>
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187 <test expect_num_outputs="1">
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188 <conditional name="input_param_type">
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189 <param name="type" value="float" />
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190 <param name="input_param" value="1.2" />
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191 <repeat name="mappings">
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192 <param name="from" value="42" />
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193 <param name="to" value="true" />
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194 </repeat>
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195 </conditional>
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196 <conditional name="unmapped">
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197 <param name="on_unmapped" value="default"/>
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198 <param name="default_value" value="False"/>
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199 </conditional>
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200 <param name="output_param_type" value="boolean"/>
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201 <param name="output_param_boolean" value_json="false" />
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202 </test>
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203 <test expect_num_outputs="1">
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204 <conditional name="input_param_type">
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205 <param name="type" value="integer" />
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206 <param name="input_param" value="1" />
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207 <repeat name="mappings">
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208 <param name="from" value="1" />
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209 <param name="to" value="1.1" />
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210 </repeat>
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211 </conditional>
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212 <param name="output_param_type" value="float"/>
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213 <param name="output_param_float" value_json="1.1" />
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214 </test>
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215 <test expect_num_outputs="1">
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216 <conditional name="input_param_type">
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217 <param name="type" value="string" />
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218 <param name="input_param" value="A" />
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219 <repeat name="mappings">
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220 <param name="from" value="A" />
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221 <param name="to" value="2" />
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222 </repeat>
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223 </conditional>
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224 <param name="output_param_type" value="integer"/>
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225 <param name="output_param_float" value_json="2" />
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226 </test>
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227 </tests>
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228 <help><![CDATA[
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229 **What it does**
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230
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231 Maps a parameter value to another value.
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232 This can be used to transform any non-data value (text, integer, float and boolean) to a different value of a different type.
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233
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234 **Settings**
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235
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236 If the value is not found in the mapping the unmodified value is returned by default.
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237 Select ``Fail if input parameter value not found in mappings`` if you wish the job to fail if an input could not be mapped.
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238
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239 Select ``Provide a default value to use if input parameter value not found in mappings`` to provide a default value to use in case the input parameter value could not be mapped.
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240 Select the proper input and output parameter types based on your workflow input and output connections.
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241
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242 **Examples**
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243
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244 You want a user to select from 3 simple options in a workflow, e.g. ``low``, ``medium``, ``high``, which correspond to distinct integer values.
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245
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246 Turn ``Map this parameter value to a different value`` into a a connectable workflow input by clicking on "Add connection to module".
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247
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248 Set the input parameter type to ``Text``, and add 3 mappings:
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249
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250 ..
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251
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252 #.
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253
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254 * Map from this value: ``low``
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255 * to this value: ``1``
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256
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257 #.
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258
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259 * Map from this value: ``medium``
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260 * to this value: ``2``
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261
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262 #.
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263
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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264 * Map from this value: ``high``
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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265 * to this value: ``3``
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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266
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267 Set ``Select type of parameter to output`` to ``Integer``.
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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268 You can now connect the output to any connectable Integer input in your workflow.
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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269
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270 ]]></help>
43d7b3642a30 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/map_param_value commit 9cbf1d6cb6a59b8b4172d09449aac695ba10687d
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271 </tool>