Mercurial > repos > iuc > medaka_consensus

annotate test-data/annotated.vcf @ 10:db25ec99c3ea draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 2a29f6676b1bbf42e9c4c3edeb4471a0ac57fbe3"
author iuc
date Mon, 29 Mar 2021 20:06:22 +0000
parents 84dcccebad3d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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4
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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1 ##fileformat=VCFv4.1
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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2 ##medaka_version=1.0.3
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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3 ##contig=<ID=NC_045512.2>
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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4 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Medaka genotype.">
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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5 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Medaka genotype quality score">
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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6 ##annotateVCFVersion=0.1
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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7 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth">
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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8 ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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9 ##INFO=<ID=FAF,Number=1,Type=Float,Description="Forward Allele Frequency">
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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10 ##INFO=<ID=RAF,Number=1,Type=Float,Description="Reverse Allele Frequency">
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
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11 ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position">
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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12 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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13 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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14 NC_045512.2 45 . G C 46.359 PASS DP=31;AF=0.900000;FAF=0.937500;RAF=0.857143;SB=6;DP4=0,2,15,12 GT:GQ 1:46
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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15 NC_045512.2 685 . AAAGTCATTT A 260.487 PASS DP=75;AF=0.880000;FAF=0.789474;RAF=0.972973;SB=0;DP4=0,0,30,36 GT:GQ 1:260
84dcccebad3d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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16 NC_045512.2 1813 . TA T 11.034 PASS DP=51;AF=0.607843;FAF=0.521739;RAF=0.678571;SB=0;DP4=0,0,12,19 GT:GQ 1:11