Mercurial > repos > iuc > medaka_consensus
comparison macros.xml @ 2:12c40c8c86db draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e5b495e8ace37eaf31a3430a29de11c83416dc2c"
author | iuc |
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date | Thu, 28 May 2020 02:38:54 -0400 |
parents | 0632744d5a5f |
children | a95960a63220 |
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1:0632744d5a5f | 2:12c40c8c86db |
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20 urldate = {2020-05-06} | 20 urldate = {2020-05-06} |
21 }</citation> | 21 }</citation> |
22 </citations> | 22 </citations> |
23 </xml> | 23 </xml> |
24 | 24 |
25 <!-- | 25 <!-- |
26 command | 26 command |
27 --> | 27 --> |
28 | 28 |
29 <token name="@REF_FASTA@"><![CDATA[ | 29 <token name="@REF_FASTA@"><![CDATA[ |
30 #if $reference_source.reference_source_selector == 'history': | 30 #if $reference_source.reference_source_selector == 'history': |
31 ln -f -s '$reference_source.ref_file' 'reference.fa' && | 31 ln -f -s '$reference_source.ref_file' reference.fa && |
32 #else: | 32 #else: |
33 ln -f -s '$reference_source.ref_file.fields.path' 'reference.fa' && | 33 ln -f -s '$reference_source.ref_file.fields.path' reference.fa && |
34 #end if | 34 #end if |
35 ]]></token> | 35 ]]></token> |
36 | 36 |
37 <!-- | 37 <!-- |
38 input | 38 input |
39 --> | 39 --> |
40 | 40 |
41 <xml name="b" token_argument="-b"> | 41 <xml name="b" token_argument="-b"> |
42 <param argument="@ARGUMENT@" type="integer" value="100" min="1" label="Set inference batch size"/> | 42 <param argument="@ARGUMENT@" type="integer" value="100" min="1" label="Set inference batch size"/> |
43 </xml> | 43 </xml> |