Mercurial > repos > iuc > medaka_consensus

comparison consensus.xml @ 4:84dcccebad3d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
author iuc
date Tue, 01 Sep 2020 03:07:44 -0400
parents 12c40c8c86db
children 5901bb391198
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3:a95960a63220 4:84dcccebad3d
1 <tool id="medaka_consensus" name="medaka: Consensus" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 1 <tool id="medaka_consensus" name="medaka: Consensus" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
2 <description>Assembly polishing via neural networks</description> 2 <description>Assembly polishing via neural networks</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
42 $tag_keep_missing 42 $tag_keep_missing
43 ## required 43 ## required
44 alignment.bam ## bam 44 alignment.bam ## bam
45 '$out_result' ## output 45 '$out_result' ## output
46 46
47 |& tee '$out_log' 47 2>&1 | tee '$out_log'
48 ]]></command> 48 ]]></command>
49 <inputs> 49 <inputs>
50 <param argument="bam" type="data" format="bam" label="Select input alignment"/> 50 <param argument="bam" type="data" format="bam" label="Select input alignment"/>
51 <expand macro="model" argument="--model"/> 51 <expand macro="model" argument="--model"/>
52 <expand macro="b" argument="--batch_size"/> 52 <expand macro="b" argument="--batch_size"/>