Mercurial > repos > iuc > medaka_consensus

comparison convert_VCF_info_fields.py @ 9:eb1f4ba66dc6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e0684fe95538cf97b1199ad1072d3da6d1619443"
author iuc
date Tue, 23 Feb 2021 20:14:28 +0000
parents 6ca28e6144fa
children 0413e62b757a
comparison
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8:6ca28e6144fa 9:eb1f4ba66dc6
84 info.append("DPSPS=%d,%d" % (dpspf, dpspr)) 84 info.append("DPSPS=%d,%d" % (dpspf, dpspr))
85 85
86 if dpsp == 0: 86 if dpsp == 0:
87 info.append("AF=NaN") 87 info.append("AF=NaN")
88 else: 88 else:
89 af = dp4[2] + dp4[3] / dpsp 89 af = (dp4[2] + dp4[3]) / dpsp
90 info.append("AF=%.6f" % (af)) 90 info.append("AF=%.6f" % (af))
91 if dpspf == 0: 91 if dpspf == 0:
92 info.append("FAF=NaN") 92 info.append("FAF=NaN")
93 else: 93 else:
94 faf = dp4[2] / dpspf 94 faf = dp4[2] / dpspf