Mercurial > repos > iuc > medaka_consensus_pipeline

comparison macros.xml @ 16:fc8804320156 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 7105600c6ba7a49e8933e1a1357566fc2126df58
author iuc
date Tue, 26 Sep 2023 10:11:13 +0000
parents 79e9a869f40e
children
comparison
equal deleted inserted replaced
15:79e9a869f40e 16:fc8804320156
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">1.7.2</token> 2 <token name="@TOOL_VERSION@">1.7.2</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">1</token>
4 <token name="@PROFILE@">21.01</token> 4 <token name="@PROFILE@">21.01</token>
5 <xml name="bio_tools"> 5 <xml name="bio_tools">
6 <xrefs> 6 <xrefs>
7 <xref type="bio.tools">medaka</xref> 7 <xref type="bio.tools">medaka</xref>
8 </xrefs> 8 </xrefs>
35 <token name="@REF_FASTA@"><![CDATA[ 35 <token name="@REF_FASTA@"><![CDATA[
36 #if $reference_source.reference_source_selector == 'history': 36 #if $reference_source.reference_source_selector == 'history':
37 #if $reference_source.ref_file.ext.endswith(".gz") 37 #if $reference_source.ref_file.ext.endswith(".gz")
38 gunzip -c '$reference_source.ref_file' > reference.fa && 38 gunzip -c '$reference_source.ref_file' > reference.fa &&
39 #else 39 #else
40 ln -f -s '$reference_source.ref_file' reference.fa && 40 cp '$reference_source.ref_file' reference.fa &&
41 #end if 41 #end if
42 #else: 42 #else:
43 ln -f -s '$reference_source.ref_file.fields.path' reference.fa && 43 cp '$reference_source.ref_file.fields.path' reference.fa &&
44 #end if 44 #end if
45 ]]></token> 45 ]]></token>
46 46
47 <!-- 47 <!--
48 input 48 input