# HG changeset patch
# User iuc
# Date 1761645499 0
# Node ID d9b6a46156267ba559efdcc79ebfa57771dba873
# Parent fc8804320156d2fd9b7c392be93fb69cba7f9c4e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/medaka commit 450d1acaa1feae57e288d7cefb5a20cfca025fe4
diff -r fc8804320156 -r d9b6a4615626 macros.xml
--- a/macros.xml Tue Sep 26 10:11:13 2023 +0000
+++ b/macros.xml Tue Oct 28 09:58:19 2025 +0000
@@ -1,6 +1,6 @@
- 1.7.2
- 1
+ 2.1.1
+ 021.01
@@ -10,6 +10,7 @@
medaka
+ scipy
@@ -52,8 +53,8 @@
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@@ -61,71 +62,92 @@
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@@ -177,12 +199,12 @@
{pore}_{device}_{caller variant}_{caller version}
-For example the model named r941_min_fast_g303 should be used with data from MinION (or GridION) R9.4.1 flowcells using the fast Guppy basecaller version 3.0.3. By contrast the model
+For example the model named r941_min_fast_g303 should be used with data from MinION (or GridION) R9.4.1 flowcells using the fast Guppy basecaller version 3.0.3. By contrast the model
r941_prom_hac_g303 should be used with PromethION data and the high accuracy basecaller (termed "hac" in Guppy configuration files). Where a version of Guppy has been used without an exactly corresponding medaka model, the medaka model with the highest version equal to or less than the guppy version should be selected.
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]]>
`_ and `github `_.
+More information are available in the `github `_.
]]>
diff -r fc8804320156 -r d9b6a4615626 medaka_consensus.xml
--- a/medaka_consensus.xml Tue Sep 26 10:11:13 2023 +0000
+++ b/medaka_consensus.xml Tue Oct 28 09:58:19 2025 +0000
@@ -16,9 +16,7 @@
-t \${GALAXY_SLOTS:-4}
## required
-i '$i'
--d 'input_assembly.fa'
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-2>&1 | tee '$out_log'
+-d 'input_assembly.fa' 2>&1 | tee log.txt
]]>
@@ -49,7 +47,7 @@
'gaps' in out
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'log' in out
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