Mercurial > repos > iuc > medaka_consensus_pipeline

changeset 15:79e9a869f40e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
author iuc
date Wed, 12 Oct 2022 07:44:40 +0000
parents cb34f00cc10f
children fc8804320156
files macros.xml medaka_consensus.xml
diffstat 2 files changed, 24 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Jun 27 17:30:31 2022 +0000
+++ b/macros.xml	Wed Oct 12 07:44:40 2022 +0000
@@ -1,6 +1,6 @@
 <macros>
-    <token name="@TOOL_VERSION@">1.4.4</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@TOOL_VERSION@">1.7.2</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">21.01</token>
     <xml name="bio_tools">
         <xrefs>
@@ -69,11 +69,26 @@
             <option value="r103_sup_g507">r103_sup_g507</option>
             <option value="r103_sup_snp_g507">r103_sup_snp_g507</option>
             <option value="r103_sup_variant_g507">r103_sup_variant_g507</option>
+            <option value="r1041_e82_400bps_fast_g615">r1041_e82_400bps_fast_g615</option>
+            <option value="r1041_e82_400bps_fast_variant_g615">r1041_e82_400bps_fast_variant_g615</option>
+            <option value="r1041_e82_400bps_hac_g615">r1041_e82_400bps_hac_g615</option>
+            <option value="r1041_e82_400bps_hac_variant_g615">r1041_e82_400bps_hac_variant_g615</option>
+            <option value="r1041_e82_400bps_sup_g615">r1041_e82_400bps_sup_g615</option>
+            <option value="r1041_e82_400bps_sup_variant_g615">r1041_e82_400bps_sup_variant_g615</option>
             <option value="r104_e81_fast_g5015">r104_e81_fast_g5015</option>
             <option value="r104_e81_hac_g5015">r104_e81_hac_g5015</option>
             <option value="r104_e81_sup_g5015">r104_e81_sup_g5015</option>
+            <option value="r104_e81_fast_variant_g5015">r104_e81_fast_variant_g5015</option>
+            <option value="r104_e81_hac_variant_g5015">r104_e81_hac_variant_g5015</option>
+            <option value="r104_e81_sup_g610">r104_e81_sup_g610</option>
+            <option value="r104_e81_sup_variant_g610">r104_e81_sup_variant_g610</option>            
             <option value="r10_min_high_g303">r10_min_high_g303</option>
-            <option value="r10_min_high_g340">r10_min_high_g340</option>
+            <option value="r10_min_high_g340">r10_min_high_g340</option>   
+            <option value="r941_e81_fast_variant_g514">r941_e81_fast_variant_g514</option>
+            <option value="r941_e81_hac_g514">r941_e81_hac_g514</option>
+            <option value="r941_e81_hac_variant_g514">r941_e81_hac_variant_g514</option>
+            <option value="r941_e81_sup_g514">r941_e81_sup_g514</option>
+            <option value="r941_e81_sup_variant_g514">r941_e81_sup_variant_g514</option>
             <option value="r941_min_fast_g303">r941_min_fast_g303</option>
             <option value="r941_min_fast_g507">r941_min_fast_g507</option>
             <option value="r941_min_fast_snp_g507">r941_min_fast_snp_g507</option>
@@ -111,6 +126,8 @@
             <option value="r941_prom_variant_g303">r941_prom_variant_g303</option>
             <option value="r941_prom_variant_g322">r941_prom_variant_g322</option>
             <option value="r941_prom_variant_g360">r941_prom_variant_g360</option>
+            <option value="r941_sup_plant_g610">r941_sup_plant_g610</option>
+            <option value="r941_sup_plant_variant_g610">r941_sup_plant_variant_g610</option>
         </param>
     </xml>
     <xml name="reference">
--- a/medaka_consensus.xml	Mon Jun 27 17:30:31 2022 +0000
+++ b/medaka_consensus.xml	Wed Oct 12 07:44:40 2022 +0000
@@ -67,12 +67,12 @@
             </output>
             <output name="out_probs">
                 <assert_contents>
-                    <has_size value="165503" delta="100"/>
+                    <has_size value="169146" delta="100"/>
                 </assert_contents>
             </output>
             <output name="out_calls">
                 <assert_contents>
-                    <has_size value="343341" delta="100"/>
+                    <has_size value="351188" delta="100"/>
                 </assert_contents>
             </output>
         </test>
@@ -91,12 +91,12 @@
             </output>
             <output name="out_probs">
                 <assert_contents>
-                    <has_size value="166251" delta="100"/>
+                    <has_size value="169863" delta="100"/>
                 </assert_contents>
             </output>
             <output name="out_calls">
                 <assert_contents>
-                    <has_size value="343340" delta="100"/>
+                    <has_size value="351188" delta="100"/>
                 </assert_contents>
             </output>
             <output name="out_log">