Mercurial > repos > iuc > medaka_snp

annotate test-data/annotate_vcf_test.vcf @ 0:179342c7b86c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
author iuc
date Wed, 12 Oct 2022 07:43:59 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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179342c7b86c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
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1 ##fileformat=VCFv4.1
179342c7b86c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
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diff changeset
2 ##medaka_version=1.0.3
179342c7b86c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
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3 ##contig=<ID=NC_045512.2>
179342c7b86c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
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4 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Medaka genotype.">
179342c7b86c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff changeset
5 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Medaka genotype quality score">
179342c7b86c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
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6 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE
179342c7b86c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
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7 NC_045512.2 45 . G C 46.359 PASS GT:GQ 1:46
179342c7b86c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff changeset
8 NC_045512.2 685 . AAAGTCATTT A 260.487 PASS GT:GQ 1:260
179342c7b86c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
iuc
parents:
diff changeset
9 NC_045512.2 1813 . TA T 11.034 PASS GT:GQ 1:11